Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PGEHNJID_6 | 46665 | 47567 | CepA-44 | ARO:3006225 | CepA-44 | 99.00 | 100.00 | NG_050386.1 |
| PGEHNJID_162 | 1911 | 3905 | tet(Q) | ARO:3000191 | tet(Q) | 97.86 | 101.07 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PGEHNJID_6 | 46665 | 47567 | cepA | Unknown Beta-lactam | 99.67 | 100.00 | U05887 |
| PGEHNJID_162 | 1945 | 3857 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.75 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PGEHNJID_6 | 46665 | 47564 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.33 | 100.00 | WP_005816369.1 |
| PGEHNJID_162 | 1944 | 3857 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.96 | 99.53 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PGEHNJID_2 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_3 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_4 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_5 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_6 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_7 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_8 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_9 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_10 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_11 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_12 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_14 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_15 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_18 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_19 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_20 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_21 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_22 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_23 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_24 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_25 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_26 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_27 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_28 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_29 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_31 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_33 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_36 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_37 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_38 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_39 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_40 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_41 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_42 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_43 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_44 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_45 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_46 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_47 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_48 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_49 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_50 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_51 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_52 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_55 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_56 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_57 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_58 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_59 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_60 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_61 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_62 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_63 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_64 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_65 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_66 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_67 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_70 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_71 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_72 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_73 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_74 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_75 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_77 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_78 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_79 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_80 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_81 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_82 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_83 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_84 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_85 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_86 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_88 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_89 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_90 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_92 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_93 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_94 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_95 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_96 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_97 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_98 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_99 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_100 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_101 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_102 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_103 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_104 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_105 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_107 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_108 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_109 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_111 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_112 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_113 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_114 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_115 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_116 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_117 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_121 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_122 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_123 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_124 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_125 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_126 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_127 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_128 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_129 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_130 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_131 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_132 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_133 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_135 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_136 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_137 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_138 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_139 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_140 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_142 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_143 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_144 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_145 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_146 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_147 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_148 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_150 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_151 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_152 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_153 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_154 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_155 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_157 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_158 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_159 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_160 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_161 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_162 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_163 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_164 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_165 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_166 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_168 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_170 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_173 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_174 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_175 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_176 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_177 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_178 | 0.0 | 1.0 | 0.0 |
| PGEHNJID_179 | 1.0 | 0.0 | 1.0 |
| PGEHNJID_180 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)