Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OLKBPIHM_1 | 61421 | 62125 | WalR | 1.70e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| OLKBPIHM_57 | 5550 | 5744 | CspR | 4.04e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| OLKBPIHM_57 | 5550 | 5747 | CspA | 6.20e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OLKBPIHM_105 | 4887 | 5789 | rep38 | 903 / 903 | 99.34 | CP005943 |
| OLKBPIHM_98 | 4248 | 5177 | rep28 | 930 / 930 | 97.74 | CP003162 |
| OLKBPIHM_83 | 12788 | 13888 | repUS73 | 1101 / 1101 | 94.46 | CP002654 |
| OLKBPIHM_112 | 994 | 1950 | repUS64 | 958 / 954 | 92.17 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OLKBPIHM_1 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_2 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_13 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_24 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_35 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_46 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_57 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_67 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_68 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_69 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_70 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_71 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_72 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_73 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_74 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_75 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_76 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_77 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_78 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_79 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_80 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_81 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_82 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_83 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_84 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_85 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_86 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_87 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_88 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_89 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_90 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_91 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_92 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_93 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_94 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_95 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_96 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_97 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_98 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_99 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_100 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_101 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_102 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_103 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_104 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_105 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_106 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_107 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_108 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_109 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_110 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_112 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_113 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_114 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_115 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_116 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_117 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_118 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_120 | 1.0 | 0.0 | 1.0 |
| OLKBPIHM_126 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_137 | 0.0 | 1.0 | 0.0 |
| OLKBPIHM_148 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OLKBPIHM_2 | 3664 | 28810 | False | Siphoviridae | VOG0045, VOG0796, VOG0691, VOG0692, VOG9317, VOG4711, VOG0695, VOG0696, VOG0697, VOG6548, VOG9763, VOG0701, VOG6163, VOG0801, VOG4619, VOG9741, VOG4705, VOG5361 |
| OLKBPIHM_13 | 1945 | 23939 | False | Siphoviridae | VOG8294, VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844 |
| OLKBPIHM_13 | 30726 | 35199 | False | Unknown | VOG6545, VOG0322, VOG4548, VOG0321, VOG11016 |
| OLKBPIHM_115 | 66003 | 92727 | False | Siphoviridae | VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG0468, VOG0741, VOG4841, VOG0198, VOG0634, VOG1183 |
Phigaro v2.4.0 (Database: Jan. 2024 release)