Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NDIFAMLA_23 | 343 | 1047 | WalR | 2.35e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NDIFAMLA_5 | 17950 | 18147 | CspR | 3.16e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NDIFAMLA_57 | 3693 | 4754 | repUS74 | 1062 / 1062 | 99.81 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NDIFAMLA_1 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_2 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_3 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_4 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_5 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_6 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_7 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_8 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_9 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_10 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_11 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_12 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_13 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_14 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_15 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_16 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_17 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_18 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_19 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_20 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_21 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_22 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_23 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_24 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_25 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_26 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_27 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_28 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_29 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_30 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_31 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_32 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_33 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_34 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_35 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_36 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_37 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_38 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_39 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_40 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_41 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_42 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_43 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_44 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_45 | 0.0 | 1.0 | 0.0 |
| NDIFAMLA_46 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_47 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_48 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_49 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_50 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_51 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_52 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_53 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_54 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_55 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_56 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_57 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_58 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_59 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_60 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_63 | 1.0 | 0.0 | 1.0 |
| NDIFAMLA_66 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NDIFAMLA_2 | 1 | 37788 | False | Siphoviridae | VOG0054, VOG1637, VOG6455, VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG10303, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG10904, VOG4570, VOG7136, VOG0198, VOG6815, VOG3643, VOG0152, VOG4643, VOG0275, VOG0195, VOG4567, VOG9741, VOG4693, VOG7735, VOG0025, VOG4799, VOG0226, VOG0322, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG6463, VOG7581, VOG6914 |
| NDIFAMLA_25 | 79555 | 91863 | True | Siphoviridae | VOG0944, VOG5532, VOG4549, VOG4570, VOG4570, VOG5088, VOG5088, VOG0198, VOG3307, VOG5317, VOG5280, VOG0982, VOG0189, VOG4799 |
| NDIFAMLA_34 | 559 | 25481 | False | Siphoviridae | VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG1898, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG4673, VOG0744, VOG4693, VOG5562, VOG5998, VOG0189, VOG4566, VOG11003, VOG1309 |
Phigaro v2.4.0 (Database: Jan. 2024 release)