Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LAEDKALJ_1 | 301110 | 300406 | WalR | 4.14e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LAEDKALJ_13 | 258749 | 258946 | CspR | 1.51e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LAEDKALJ_60 | 26424 | 26997 | rep38 | 576 / 903 | 91.32 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LAEDKALJ_1 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_2 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_3 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_4 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_5 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_6 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_7 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_8 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_9 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_10 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_11 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_12 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_13 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_14 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_15 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_16 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_17 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_18 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_19 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_20 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_21 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_22 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_23 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_24 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_25 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_26 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_27 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_28 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_29 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_30 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_31 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_32 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_33 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_34 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_35 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_36 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_37 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_38 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_39 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_40 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_41 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_42 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_43 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_44 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_45 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_46 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_47 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_48 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_49 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_50 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_51 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_52 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_53 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_54 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_55 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_56 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_57 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_58 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_59 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_60 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_62 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_65 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_66 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_67 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_68 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_69 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_70 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_71 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_72 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_73 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_74 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_75 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_76 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_78 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_80 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_81 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_82 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_83 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_84 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_85 | 0.0 | 1.0 | 0.0 |
| LAEDKALJ_86 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_87 | 1.0 | 0.0 | 1.0 |
| LAEDKALJ_88 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LAEDKALJ_11 | 986 | 30945 | False | Siphoviridae | VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG0198, VOG0044, VOG3643, VOG3643, VOG2820, VOG9759, VOG4813, VOG4693, VOG7735, VOG0025, VOG4799, VOG0226, VOG0322, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG3459, VOG3711, VOG4552, VOG4552 |
| LAEDKALJ_13 | 175876 | 186123 | False | Siphoviridae | VOG4632, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
| LAEDKALJ_27 | 206055 | 211921 | False | Unknown | VOG1292, VOG0275, VOG6495, VOG8294, VOG0703, VOG0753 |
| LAEDKALJ_33 | 15597 | 27047 | True | Unknown | VOG3478, VOG0275, VOG7537, VOG4585, VOG0275, VOG2070 |
Phigaro v2.4.0 (Database: Jan. 2024 release)