Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LJDPMPOD_6 | 55032 | 54328 | WalR | 9.15e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LJDPMPOD_34 | 51849 | 51652 | CspR | 3.88e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LJDPMPOD_1 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_2 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_3 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_4 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_5 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_6 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_7 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_8 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_9 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_10 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_11 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_12 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_13 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_14 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_15 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_16 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_17 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_18 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_19 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_20 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_21 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_22 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_23 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_24 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_25 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_26 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_27 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_28 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_29 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_30 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_31 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_32 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_33 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_34 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_35 | 1.0 | 0.0 | 1.0 |
| LJDPMPOD_36 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_37 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_38 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_39 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_40 | 1.0 | 0.0 | 1.0 |
| LJDPMPOD_41 | 1.0 | 0.0 | 1.0 |
| LJDPMPOD_42 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_43 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_44 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_45 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_46 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_47 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_48 | 1.0 | 0.0 | 1.0 |
| LJDPMPOD_49 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_50 | 1.0 | 0.0 | 1.0 |
| LJDPMPOD_51 | 1.0 | 0.0 | 1.0 |
| LJDPMPOD_52 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_53 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_54 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_55 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_56 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_57 | 1.0 | 0.0 | 1.0 |
| LJDPMPOD_58 | 1.0 | 0.0 | 1.0 |
| LJDPMPOD_59 | 1.0 | 0.0 | 1.0 |
| LJDPMPOD_62 | 1.0 | 0.0 | 1.0 |
| LJDPMPOD_63 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_64 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_65 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_66 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_67 | 1.0 | 0.0 | 1.0 |
| LJDPMPOD_68 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_69 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_70 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_71 | 0.0 | 1.0 | 0.0 |
| LJDPMPOD_72 | 1.0 | 0.0 | 1.0 |
| LJDPMPOD_73 | 1.0 | 0.0 | 1.0 |
| LJDPMPOD_74 | 1.0 | 0.0 | 1.0 |
| LJDPMPOD_76 | 1.0 | 0.0 | 1.0 |
| LJDPMPOD_77 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LJDPMPOD_23 | 36408 | 47276 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4609, VOG4632 |
| LJDPMPOD_25 | 138023 | 175625 | False | Siphoviridae | VOG3412, VOG4918, VOG0054, VOG7888, VOG4705, VOG4599, VOG4605, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4549, VOG0198, VOG0044, VOG3643, VOG3643, VOG2820, VOG9759, VOG4813, VOG4693, VOG7735, VOG0025, VOG4799, VOG0226, VOG0322, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG3459, VOG3711, VOG4552, VOG4552 |
Phigaro v2.4.0 (Database: Jan. 2024 release)