Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AFFCDLMF_32 | 160705 | 162624 | tet(O) | ARO:3000190 | tet(O) | 99.37 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AFFCDLMF_32 | 160705 | 162624 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.79 | 100.00 | M18896 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AFFCDLMF_32 | 160705 | 162621 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.84 | 100.00 | WP_012669445.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AFFCDLMF_1 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_2 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_3 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_4 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_5 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_6 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_7 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_9 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_11 | 1.0 | 0.0 | 1.0 |
| AFFCDLMF_12 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_14 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_15 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_16 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_18 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_19 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_20 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_21 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_22 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_23 | 1.0 | 0.0 | 1.0 |
| AFFCDLMF_24 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_25 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_27 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_28 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_29 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_30 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_32 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_33 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_34 | 1.0 | 0.0 | 1.0 |
| AFFCDLMF_35 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_37 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_38 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_39 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_40 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_41 | 1.0 | 0.0 | 1.0 |
| AFFCDLMF_42 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_43 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_44 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_46 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_48 | 1.0 | 0.0 | 1.0 |
| AFFCDLMF_50 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_51 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_52 | 1.0 | 0.0 | 1.0 |
| AFFCDLMF_53 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_54 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_57 | 1.0 | 0.0 | 1.0 |
| AFFCDLMF_58 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_59 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_60 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_63 | 1.0 | 0.0 | 1.0 |
| AFFCDLMF_64 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_67 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_72 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_73 | 1.0 | 0.0 | 1.0 |
| AFFCDLMF_74 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_75 | 1.0 | 0.0 | 1.0 |
| AFFCDLMF_76 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_77 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_78 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_80 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_81 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_82 | 1.0 | 0.0 | 1.0 |
| AFFCDLMF_83 | 0.0 | 1.0 | 0.0 |
| AFFCDLMF_84 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AFFCDLMF_12 | 15382 | 22659 | True | Unknown | VOG6495, |
| AFFCDLMF_37 | 212558 | 248017 | False | Siphoviridae | VOG9667, |
Phigaro v2.4.0 (Database: Jan. 2024 release)