Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OLBJEFDE_32 | 105139 | 107058 | tet(W) | ARO:3000194 | tet(W) | 99.84 | 100.00 | AJ222769.3 |
| OLBJEFDE_43 | 90827 | 94390 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.91 | 100.08 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OLBJEFDE_32 | 105139 | 107058 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.95 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OLBJEFDE_32 | 105139 | 107055 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_002586627.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OLBJEFDE_1 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_2 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_3 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_4 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_5 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_6 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_7 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_8 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_9 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_12 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_13 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_14 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_16 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_17 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_19 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_20 | 1.0 | 0.0 | 1.0 |
| OLBJEFDE_21 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_22 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_23 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_25 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_26 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_27 | 1.0 | 0.0 | 1.0 |
| OLBJEFDE_28 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_29 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_31 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_32 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_33 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_34 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_35 | 1.0 | 0.0 | 1.0 |
| OLBJEFDE_38 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_39 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_41 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_42 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_43 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_44 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_45 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_46 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_48 | 1.0 | 0.0 | 1.0 |
| OLBJEFDE_49 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_50 | 1.0 | 0.0 | 1.0 |
| OLBJEFDE_51 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_52 | 1.0 | 0.0 | 1.0 |
| OLBJEFDE_59 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_60 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_61 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_62 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_63 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_64 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_65 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_66 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_67 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_68 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_69 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_70 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_71 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_72 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_73 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_74 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_76 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_77 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_78 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_79 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_81 | 0.0 | 1.0 | 0.0 |
| OLBJEFDE_82 | 1.0 | 0.0 | 1.0 |
| OLBJEFDE_83 | 1.0 | 0.0 | 1.0 |
| OLBJEFDE_84 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OLBJEFDE_69 | 190225 | 210307 | False | Siphoviridae | VOG4545, VOG4621, VOG1159, VOG1210, VOG4553, VOG4568, VOG4556, VOG4544, VOG2038, VOG1897, VOG2902, VOG8722, VOG4583, VOG3699, VOG4693, VOG0226, VOG6830, VOG1309, VOG4600 |
Phigaro v2.4.0 (Database: Jan. 2024 release)