Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HLKFIFDC_16 | 79444 | 81363 | tet(O) | ARO:3000190 | tet(O) | 98.28 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HLKFIFDC_16 | 79444 | 81363 | tet(O) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Y07780 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HLKFIFDC_16 | 79444 | 81360 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | EXACTX | 100.00 | 100.00 | WP_000691759.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HLKFIFDC_1 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_2 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_3 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_4 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_5 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_6 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_7 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_8 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_9 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_10 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_11 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_12 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_13 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_14 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_15 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_16 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_17 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_18 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_19 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_20 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_21 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_22 | 1.0 | 0.0 | 1.0 |
| HLKFIFDC_23 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_24 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_25 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_26 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_27 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_28 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_29 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_30 | 0.0 | 1.0 | 0.0 |
| HLKFIFDC_31 | 1.0 | 0.0 | 1.0 |
| HLKFIFDC_32 | 1.0 | 0.0 | 1.0 |
| HLKFIFDC_33 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HLKFIFDC_3 | 184074 | 199979 | False | Siphoviridae | VOG4633, |
| HLKFIFDC_9 | 91651 | 134891 | False | Myoviridae | VOG0047, |
Phigaro v2.4.0 (Database: Jan. 2024 release)