Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFMHHIDB_9 | 486291 | 489854 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
| EFMHHIDB_9 | 396941 | 398221 | tet(O) | ARO:3000190 | tet(O) | 98.10 | 66.67 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EFMHHIDB_9 | 396298 | 398221 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.27 | 100.00 | M18896 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFMHHIDB_9 | 396959 | 398221 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | PARTIALX | 98.81 | 65.88 | WP_063856405.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EFMHHIDB_2 | 1.0 | 0.0 | 1.0 |
| EFMHHIDB_4 | 0.0 | 1.0 | 0.0 |
| EFMHHIDB_5 | 0.0 | 1.0 | 0.0 |
| EFMHHIDB_7 | 0.0 | 1.0 | 0.0 |
| EFMHHIDB_8 | 0.0 | 1.0 | 0.0 |
| EFMHHIDB_9 | 0.0 | 1.0 | 0.0 |
| EFMHHIDB_10 | 1.0 | 0.0 | 1.0 |
| EFMHHIDB_11 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EFMHHIDB_5 | 49265 | 66657 | False | Siphoviridae | VOG1298, VOG7138, VOG4552, VOG7246, VOG2124, VOG4600, VOG1309, VOG0226, VOG4693, VOG5733, VOG8722, VOG8271, VOG2038, VOG0296, VOG4544, VOG4556, VOG4568, VOG4553 |
| EFMHHIDB_9 | 272412 | 284350 | False | Siphoviridae | VOG9569, VOG5793, VOG5588, VOG5589, VOG5587, VOG4568, VOG4556, VOG4544 |
Phigaro v2.4.0 (Database: Jan. 2024 release)