Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NGOBNCJP_10 | 9923 | 9219 | WalR | 1.90e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NGOBNCJP_5 | 14169 | 14366 | CspR | 6.91e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NGOBNCJP_1 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_2 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_3 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_4 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_5 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_6 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_7 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_8 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_9 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_10 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_11 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_12 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_13 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_14 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_15 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_16 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_17 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_18 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_19 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_20 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_23 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_24 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_25 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_26 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_27 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_28 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_29 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_30 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_31 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_32 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_33 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_34 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_35 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_36 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_37 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_38 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_39 | 1.0 | 0.0 | 1.0 |
| NGOBNCJP_40 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_45 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_56 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_67 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_78 | 0.0 | 1.0 | 0.0 |
| NGOBNCJP_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NGOBNCJP_1 | 397808 | 418055 | False | Siphoviridae | VOG0703, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1887, VOG3434, VOG4555, VOG0637, VOG1183, VOG4564, VOG0720, VOG4544, VOG3699 |
| NGOBNCJP_5 | 37226 | 41195 | False | Unknown | VOG1309, VOG0186, VOG4855, VOG0226 |
| NGOBNCJP_23 | 278447 | 288911 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4609, VOG4632 |
| NGOBNCJP_34 | 7204 | 40736 | False | Siphoviridae | VOG6495, VOG3622, VOG4552, VOG6671, VOG10670, VOG0181, VOG10867, VOG3642, VOG4799, VOG0189, VOG0982, VOG0047, VOG10489, VOG0198, VOG9741, VOG4570, VOG4549, VOG1345, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG9975, VOG0205, VOG0207, VOG4586, VOG0209, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703 |
| NGOBNCJP_45 | 219993 | 248523 | False | Siphoviridae | VOG4649, VOG0703, VOG0054, VOG1637, VOG0648, VOG3498, VOG4763, VOG4633, VOG4545, VOG1898, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG0519, VOG4841, VOG4673, VOG0744, VOG4693, VOG5562, VOG5998, VOG7363, VOG0189, VOG4566, VOG11003, VOG1309, VOG4600, VOG10867, VOG0181 |
Phigaro v2.4.0 (Database: Jan. 2024 release)