Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HMNDBAKH_20 | 91 | 1056 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HMNDBAKH_20 | 91 | 1056 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| HMNDBAKH_20 | 91 | 1056 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| HMNDBAKH_20 | 91 | 1056 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| HMNDBAKH_20 | 91 | 1056 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HMNDBAKH_20 | 91 | 1053 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HMNDBAKH_16 | 51080 | 49500 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HMNDBAKH_1 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_2 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_3 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_4 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_5 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_6 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_7 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_8 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_9 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_10 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_11 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_12 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_13 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_14 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_15 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_16 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_17 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_18 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_19 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_20 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_21 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_22 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_23 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_24 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_25 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_26 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_27 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_28 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_29 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_30 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_31 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_32 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_33 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_34 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_35 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_36 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_37 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_38 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_39 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_40 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_41 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_42 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_43 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_44 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_45 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_46 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_47 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_48 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_49 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_50 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_51 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_52 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_53 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_54 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_55 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_56 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_57 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_58 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_59 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_60 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_61 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_62 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_63 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_64 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_65 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_66 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_67 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_68 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_69 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_70 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_71 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_72 | 1.0 | 0.0 | 1.0 |
| HMNDBAKH_73 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_74 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_75 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_76 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_77 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_78 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_79 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_80 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_81 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_82 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_83 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_84 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_85 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_86 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_87 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_88 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_89 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_90 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_91 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_92 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_93 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_94 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_95 | 1.0 | 0.0 | 1.0 |
| HMNDBAKH_96 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_97 | 1.0 | 0.0 | 1.0 |
| HMNDBAKH_98 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_99 | 0.0 | 1.0 | 0.0 |
| HMNDBAKH_100 | 1.0 | 0.0 | 1.0 |
| HMNDBAKH_101 | 1.0 | 0.0 | 1.0 |
| HMNDBAKH_102 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HMNDBAKH_12 | 72125 | 80921 | False | Unknown | VOG0327, |
Phigaro v2.4.0 (Database: Jan. 2024 release)