Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IIKLFOKB_31 | 125030 | 126235 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| IIKLFOKB_19 | 78934 | 79824 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
| IIKLFOKB_31 | 7149 | 7949 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| IIKLFOKB_31 | 5800 | 6936 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IIKLFOKB_31 | 7149 | 7949 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| IIKLFOKB_31 | 5770 | 6936 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IIKLFOKB_19 | 78937 | 79824 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| IIKLFOKB_31 | 7152 | 7949 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| IIKLFOKB_31 | 125030 | 126232 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| IIKLFOKB_31 | 5770 | 6933 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.48 | 100.00 | WP_008651082.1 |
| IIKLFOKB_31 | 126260 | 126769 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IIKLFOKB_1 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_2 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_3 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_4 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_5 | 1.0 | 0.0 | 1.0 |
| IIKLFOKB_6 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_7 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_8 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_9 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_10 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_11 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_12 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_13 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_14 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_15 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_16 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_17 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_18 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_19 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_20 | 1.0 | 0.0 | 1.0 |
| IIKLFOKB_21 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_22 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_23 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_24 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_25 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_26 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_27 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_28 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_29 | 1.0 | 0.0 | 1.0 |
| IIKLFOKB_30 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_31 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_32 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_33 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_34 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_35 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_36 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_37 | 1.0 | 0.0 | 1.0 |
| IIKLFOKB_38 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_39 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_40 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_41 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_42 | 0.0 | 1.0 | 0.0 |
| IIKLFOKB_43 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IIKLFOKB_31 | 216147 | 233380 | False | Siphoviridae | VOG4567, |
Phigaro v2.4.0 (Database: Jan. 2024 release)