Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OEHKCDHA_38 | 38692 | 39516 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OEHKCDHA_38 | 38692 | 39516 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OEHKCDHA_38 | 38692 | 39513 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OEHKCDHA_2 | 184061 | 182481 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OEHKCDHA_1 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_2 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_3 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_4 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_5 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_6 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_7 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_8 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_9 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_10 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_11 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_12 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_13 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_14 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_15 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_16 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_17 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_18 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_19 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_20 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_21 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_22 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_23 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_24 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_25 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_26 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_27 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_28 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_29 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_30 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_31 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_32 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_33 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_34 | 1.0 | 0.0 | 1.0 |
| OEHKCDHA_35 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_36 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_37 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_38 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_39 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_40 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_41 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_42 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_43 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_44 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_45 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_46 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_47 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_48 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_49 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_50 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_51 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_52 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_53 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_54 | 1.0 | 0.0 | 1.0 |
| OEHKCDHA_55 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_56 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_57 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_58 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_59 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_60 | 1.0 | 0.0 | 1.0 |
| OEHKCDHA_61 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_62 | 1.0 | 0.0 | 1.0 |
| OEHKCDHA_63 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_64 | 1.0 | 0.0 | 1.0 |
| OEHKCDHA_65 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_66 | 0.0 | 1.0 | 0.0 |
| OEHKCDHA_67 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OEHKCDHA_10 | 69414 | 80892 | False | Siphoviridae | VOG0749, |
| OEHKCDHA_34 | 14585 | 28554 | False | Unknown | VOG0083, |
| OEHKCDHA_35 | 6660 | 13016 | False | Unknown | VOG0322, |
| OEHKCDHA_35 | 38067 | 41669 | False | Unknown | VOG9348, |
Phigaro v2.4.0 (Database: Jan. 2024 release)