Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NODEJKFE_2 | 293695 | 294660 | CfxA2 | ARO:3003002 | CfxA2 | 99.38 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NODEJKFE_2 | 293695 | 294660 | cfxA3 | Ampicillin | 98.45 | 100.00 | AF472622 |
| NODEJKFE_2 | 293695 | 294660 | cfxA4 | Unknown Beta-lactam | 98.45 | 100.00 | AY769933 |
| NODEJKFE_2 | 293695 | 294660 | cfxA5 | Unknown Beta-lactam | 98.45 | 100.00 | AY769934 |
| NODEJKFE_2 | 293695 | 294660 | cfxA | Cefoxitin, Ampicillin | 98.45 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NODEJKFE_2 | 293695 | 294657 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NODEJKFE_3 | 184061 | 182481 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NODEJKFE_1 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_2 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_3 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_4 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_5 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_6 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_7 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_8 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_9 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_10 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_11 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_12 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_13 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_14 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_15 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_16 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_17 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_18 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_19 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_20 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_21 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_22 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_23 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_24 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_25 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_26 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_27 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_28 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_29 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_30 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_31 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_32 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_33 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_34 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_35 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_36 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_37 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_38 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_39 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_40 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_41 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_42 | 1.0 | 0.0 | 1.0 |
| NODEJKFE_43 | 1.0 | 0.0 | 1.0 |
| NODEJKFE_44 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_45 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_46 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_47 | 0.0 | 1.0 | 0.0 |
| NODEJKFE_48 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NODEJKFE_11 | 43498 | 55476 | False | Siphoviridae | VOG8932, |
Phigaro v2.4.0 (Database: Jan. 2024 release)