Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 1 | 0 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HOLDFMEC_17 | 104201 | 105406 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| HOLDFMEC_17 | 82253 | 83155 | cepA | ARO:3003559 | cepA | 99.33 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HOLDFMEC_17 | 82253 | 83155 | cepA | Unknown Beta-lactam | 99.67 | 100.00 | L13472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HOLDFMEC_17 | 105431 | 105940 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| HOLDFMEC_17 | 104201 | 105403 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| HOLDFMEC_17 | 82256 | 83155 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.33 | 100.00 | WP_005795628.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| HOLDFMEC_15 | 59198 | 60391 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 100.00 | 100.00 | BAA77276 |
| HOLDFMEC_15 | 59198 | 60391 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 94.89 | 100.00 | BAA77277 |
| HOLDFMEC_15 | 59198 | 60391 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 94.47 | 100.00 | BAA77275 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HOLDFMEC_1 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_2 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_3 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_4 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_5 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_6 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_7 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_8 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_9 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_10 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_11 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_12 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_13 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_14 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_15 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_16 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_17 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_18 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_19 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_20 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_21 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_22 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_23 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_24 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_25 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_26 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_27 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_28 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_29 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_30 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_31 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_32 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_33 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_34 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_35 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_36 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_37 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_38 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_39 | 1.0 | 0.0 | 1.0 |
| HOLDFMEC_40 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_41 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_42 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_43 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_44 | 1.0 | 0.0 | 1.0 |
| HOLDFMEC_45 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_46 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_47 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_48 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_49 | 1.0 | 0.0 | 1.0 |
| HOLDFMEC_50 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_51 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_52 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_53 | 1.0 | 0.0 | 1.0 |
| HOLDFMEC_54 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_55 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_56 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_57 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_58 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_59 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_60 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_61 | 1.0 | 0.0 | 1.0 |
| HOLDFMEC_62 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_63 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_64 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_65 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_66 | 0.0 | 1.0 | 0.0 |
| HOLDFMEC_67 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)