Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LPEOPCCA_15 | 54188 | 55153 | CfxA2 | ARO:3003002 | CfxA2 | 99.38 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LPEOPCCA_15 | 54188 | 55153 | cfxA3 | Ampicillin | 98.45 | 100.00 | AF472622 |
| LPEOPCCA_15 | 54188 | 55153 | cfxA4 | Unknown Beta-lactam | 98.45 | 100.00 | AY769933 |
| LPEOPCCA_15 | 54188 | 55153 | cfxA5 | Unknown Beta-lactam | 98.45 | 100.00 | AY769934 |
| LPEOPCCA_15 | 54188 | 55153 | cfxA | Cefoxitin, Ampicillin | 98.45 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LPEOPCCA_15 | 54188 | 55150 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LPEOPCCA_1 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_2 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_3 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_4 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_5 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_6 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_7 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_8 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_9 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_10 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_11 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_12 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_13 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_14 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_15 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_16 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_17 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_18 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_19 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_20 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_21 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_22 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_23 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_24 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_25 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_26 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_27 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_28 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_29 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_30 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_31 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_32 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_33 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_34 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_35 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_36 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_37 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_38 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_39 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_40 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_41 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_42 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_43 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_44 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_45 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_46 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_47 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_48 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_49 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_50 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_51 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_52 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_53 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_54 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_55 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_56 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_57 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_58 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_59 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_60 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_61 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_62 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_63 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_64 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_65 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_66 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_67 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_68 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_69 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_70 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_71 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_72 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_73 | 1.0 | 0.0 | 1.0 |
| LPEOPCCA_74 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_75 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_76 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_77 | 0.0 | 1.0 | 0.0 |
| LPEOPCCA_78 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LPEOPCCA_20 | 10071 | 18788 | False | Siphoviridae | VOG8923, |
Phigaro v2.4.0 (Database: Jan. 2024 release)