Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HIHFBEEF_4 | 229070 | 230650 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 87.29 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HIHFBEEF_1 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_2 | 1.0 | 0.0 | 1.0 |
| HIHFBEEF_3 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_4 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_5 | 1.0 | 0.0 | 1.0 |
| HIHFBEEF_6 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_7 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_8 | 1.0 | 0.0 | 1.0 |
| HIHFBEEF_9 | 1.0 | 0.0 | 1.0 |
| HIHFBEEF_10 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_11 | 1.0 | 0.0 | 1.0 |
| HIHFBEEF_12 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_13 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_14 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_15 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_16 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_17 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_18 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_19 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_20 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_21 | 1.0 | 0.0 | 1.0 |
| HIHFBEEF_22 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_23 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_24 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_25 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_26 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_27 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_28 | 1.0 | 0.0 | 1.0 |
| HIHFBEEF_29 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_30 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_31 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_32 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_33 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_34 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_35 | 1.0 | 0.0 | 1.0 |
| HIHFBEEF_36 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_37 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_38 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_39 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_40 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_41 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_42 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_43 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_44 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_45 | 1.0 | 0.0 | 1.0 |
| HIHFBEEF_46 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_47 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_48 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_49 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_50 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_51 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_52 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_53 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_54 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_55 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_56 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_57 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_58 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_59 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_60 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_61 | 1.0 | 0.0 | 1.0 |
| HIHFBEEF_62 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_63 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_64 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_65 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_66 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_67 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_68 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_69 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_70 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_71 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_72 | 1.0 | 0.0 | 1.0 |
| HIHFBEEF_73 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_74 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_75 | 1.0 | 0.0 | 1.0 |
| HIHFBEEF_76 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_77 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_78 | 1.0 | 0.0 | 1.0 |
| HIHFBEEF_79 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_80 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_81 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_82 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_83 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_84 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_85 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_86 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_87 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_88 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_89 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_90 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_91 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_92 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_93 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_94 | 0.0 | 1.0 | 0.0 |
| HIHFBEEF_95 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HIHFBEEF_55 | 718 | 19258 | False | Siphoviridae | VOG6154, |
| HIHFBEEF_56 | 119067 | 124354 | False | Unknown | VOG4573, |
| HIHFBEEF_66 | 4942 | 13973 | True | Siphoviridae | VOG0275, |
| HIHFBEEF_82 | 10065 | 16976 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)