Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LGPLFOBG_20 | 27585 | 26005 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LGPLFOBG_1 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_2 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_3 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_4 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_5 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_6 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_7 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_8 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_9 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_10 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_11 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_12 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_13 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_14 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_15 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_16 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_17 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_18 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_19 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_20 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_21 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_22 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_23 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_24 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_25 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_26 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_27 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_28 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_29 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_30 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_31 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_32 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_33 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_34 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_35 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_36 | 1.0 | 0.0 | 1.0 |
| LGPLFOBG_37 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_38 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_39 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_40 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_41 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_42 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_43 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_44 | 1.0 | 0.0 | 1.0 |
| LGPLFOBG_45 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_46 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_47 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_48 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_49 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_50 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_51 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_52 | 0.0 | 1.0 | 0.0 |
| LGPLFOBG_53 | 1.0 | 0.0 | 1.0 |
| LGPLFOBG_54 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LGPLFOBG_12 | 103059 | 106233 | False | Myoviridae | VOG0322, |
| LGPLFOBG_12 | 107290 | 113674 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)