Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GKDEAPHO_22 | 18985 | 20910 | tet(Q) | ARO:3000191 | tet(Q) | 99.84 | 97.56 | Z21523.1 |
| GKDEAPHO_83 | 4704 | 5504 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
| GKDEAPHO_83 | 3325 | 4491 | tet(X) | ARO:3000205 | tet(X) | 99.48 | 100.00 | M37699.1 |
| GKDEAPHO_18 | 3091 | 3981 | CblA-1 | ARO:3002999 | CblA-1 | 99.32 | 100.00 | GQ343019.1 |
| GKDEAPHO_80 | 112 | 1077 | CfxA5 | ARO:3003096 | CfxA5 | 100.00 | 100.00 | AY769934.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GKDEAPHO_80 | 112 | 1077 | cfxA5 | Unknown Beta-lactam | 100.00 | 100.00 | AY769934 |
| GKDEAPHO_83 | 4704 | 5504 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| GKDEAPHO_22 | 18985 | 20910 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.95 | 100.00 | Z21523 |
| GKDEAPHO_83 | 3325 | 4491 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| GKDEAPHO_8 | 54577 | 55527 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| GKDEAPHO_8 | 54577 | 55527 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| GKDEAPHO_8 | 54577 | 55527 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GKDEAPHO_80 | 112 | 1074 | cfxA5 | broad-spectrum class A beta-lactamase CfxA5 | EXACTX | 100.00 | 100.00 | WP_032946415.1 |
| GKDEAPHO_83 | 4707 | 5504 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| GKDEAPHO_22 | 18988 | 20910 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.84 | 100.00 | WP_002560998.1 |
| GKDEAPHO_83 | 3325 | 4488 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.48 | 100.00 | WP_008651082.1 |
| GKDEAPHO_18 | 3094 | 3981 | cblA | CblA family class A beta-lactamase | BLASTX | 99.32 | 100.00 | WP_005827792.1 |
| GKDEAPHO_8 | 54576 | 55529 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GKDEAPHO_1 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_2 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_3 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_4 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_5 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_6 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_7 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_8 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_9 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_10 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_11 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_12 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_13 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_14 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_15 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_16 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_17 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_18 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_19 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_20 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_21 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_22 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_23 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_24 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_25 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_26 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_27 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_28 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_29 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_30 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_31 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_32 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_33 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_34 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_35 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_36 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_37 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_38 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_39 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_40 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_41 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_42 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_43 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_44 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_45 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_46 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_47 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_48 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_49 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_50 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_51 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_52 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_53 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_54 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_55 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_56 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_57 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_58 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_59 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_60 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_61 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_62 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_63 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_64 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_65 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_66 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_67 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_68 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_69 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_70 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_71 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_72 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_73 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_74 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_75 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_76 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_77 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_78 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_79 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_80 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_81 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_82 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_83 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_84 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_85 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_86 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_87 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_88 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_89 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_90 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_91 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_92 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_93 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_94 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_95 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_96 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_97 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_98 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_99 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_100 | 0.0 | 1.0 | 0.0 |
| GKDEAPHO_101 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_102 | 1.0 | 0.0 | 1.0 |
| GKDEAPHO_103 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GKDEAPHO_6 | 6553 | 18221 | False | Siphoviridae | VOG7268, |
| GKDEAPHO_16 | 80318 | 92927 | True | Unknown | VOG0275, |
| GKDEAPHO_27 | 8531 | 23359 | False | Siphoviridae | VOG4573, |
| GKDEAPHO_44 | 7049 | 21133 | False | Myoviridae | VOG2149, |
Phigaro v2.4.0 (Database: Jan. 2024 release)