Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OMCNPMML_47 | 19193 | 20488 | tet(Q) | ARO:3000191 | tet(Q) | 97.45 | 65.60 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OMCNPMML_47 | 19193 | 20490 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.00 | 67.39 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OMCNPMML_47 | 19196 | 20488 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 98.38 | 67.24 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OMCNPMML_23 | 17635 | 16055 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OMCNPMML_1 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_2 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_3 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_4 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_5 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_6 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_7 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_8 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_9 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_10 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_11 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_12 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_13 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_14 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_15 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_16 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_17 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_18 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_19 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_20 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_21 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_22 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_23 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_24 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_25 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_26 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_27 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_28 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_29 | 1.0 | 0.0 | 1.0 |
| OMCNPMML_30 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_31 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_32 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_33 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_34 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_35 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_36 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_37 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_38 | 1.0 | 0.0 | 1.0 |
| OMCNPMML_39 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_40 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_41 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_42 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_43 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_44 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_45 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_46 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_47 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_48 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_49 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_50 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_51 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_52 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_53 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_54 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_55 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_56 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_57 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_58 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_59 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_60 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_61 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_62 | 1.0 | 0.0 | 1.0 |
| OMCNPMML_63 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_64 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_65 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_66 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_67 | 1.0 | 0.0 | 1.0 |
| OMCNPMML_68 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_69 | 1.0 | 0.0 | 1.0 |
| OMCNPMML_72 | 0.0 | 1.0 | 0.0 |
| OMCNPMML_73 | 1.0 | 0.0 | 1.0 |
| OMCNPMML_74 | 1.0 | 0.0 | 1.0 |
| OMCNPMML_75 | 1.0 | 0.0 | 1.0 |
| OMCNPMML_76 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OMCNPMML_29 | 8667 | 22375 | False | Siphoviridae | VOG10636, |
| OMCNPMML_29 | 40103 | 65572 | False | Siphoviridae | VOG5759, |
Phigaro v2.4.0 (Database: Jan. 2024 release)