Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGADBAPD_11 | 644 | 1444 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CGADBAPD_11 | 644 | 1444 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| CGADBAPD_11 | 3393 | 4610 | mef(A) | Erythromycin, Azithromycin | 95.16 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGADBAPD_11 | 647 | 1444 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| CGADBAPD_11 | 3393 | 4607 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 98.77 | 99.26 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGADBAPD_1 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_2 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_3 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_4 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_5 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_6 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_7 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_8 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_9 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_10 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_11 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_12 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_13 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_14 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_15 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_16 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_17 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_18 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_19 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_20 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_21 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_22 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_23 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_24 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_25 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_26 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_27 | 0.0 | 1.0 | 0.0 |
| CGADBAPD_28 | 1.0 | 0.0 | 1.0 |
| CGADBAPD_29 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)