Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LKPACBAO_22 | 1849 | 269 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LKPACBAO_1 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_2 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_3 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_4 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_5 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_6 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_7 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_8 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_9 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_10 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_11 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_12 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_13 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_14 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_15 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_16 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_17 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_18 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_19 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_20 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_21 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_22 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_23 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_24 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_25 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_26 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_27 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_28 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_29 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_30 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_31 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_32 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_33 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_34 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_35 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_36 | 1.0 | 0.0 | 1.0 |
| LKPACBAO_37 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_38 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_39 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_40 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_41 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_42 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_43 | 1.0 | 0.0 | 1.0 |
| LKPACBAO_44 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_45 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_46 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_47 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_48 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_49 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_50 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_51 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_52 | 1.0 | 0.0 | 1.0 |
| LKPACBAO_53 | 1.0 | 0.0 | 1.0 |
| LKPACBAO_54 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_55 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_56 | 1.0 | 0.0 | 1.0 |
| LKPACBAO_57 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_58 | 0.0 | 1.0 | 0.0 |
| LKPACBAO_59 | 1.0 | 0.0 | 1.0 |
| LKPACBAO_60 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LKPACBAO_7 | 58614 | 74120 | False | Siphoviridae | VOG0720, |
| LKPACBAO_12 | 53454 | 57267 | False | Siphoviridae | VOG10095, |
| LKPACBAO_33 | 18087 | 24214 | False | Unknown | VOG4618, |
Phigaro v2.4.0 (Database: Jan. 2024 release)