Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCAFEPLC_23 | 48829 | 49731 | CepA-44 | ARO:3006225 | CepA-44 | 99.67 | 100.00 | NG_050386.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PCAFEPLC_23 | 48829 | 49731 | cepA-44 | Unknown Beta-lactam | 99.89 | 100.00 | U05885 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCAFEPLC_23 | 48832 | 49731 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_032579291.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PCAFEPLC_1 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_2 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_3 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_4 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_5 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_6 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_7 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_8 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_9 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_10 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_11 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_12 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_13 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_14 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_15 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_16 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_17 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_18 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_19 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_20 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_21 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_22 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_23 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_24 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_25 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_26 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_27 | 1.0 | 0.0 | 1.0 |
| PCAFEPLC_28 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_29 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_30 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_31 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_32 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_33 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_34 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_35 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_36 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_37 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_38 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_39 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_40 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_41 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_42 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_43 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_44 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_45 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_46 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_47 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_48 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_49 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_50 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_51 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_52 | 0.0 | 1.0 | 0.0 |
| PCAFEPLC_53 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)