Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBBHEFLD_30 | 679 | 1413 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PBBHEFLD_30 | 679 | 1413 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.46 | 100.00 | M15332 |
| PBBHEFLD_30 | 2185 | 3648 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| PBBHEFLD_30 | 3774 | 4988 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBBHEFLD_30 | 682 | 1413 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| PBBHEFLD_30 | 2188 | 3648 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| PBBHEFLD_30 | 3765 | 4988 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PBBHEFLD_1 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_2 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_3 | 1.0 | 0.0 | 1.0 |
| PBBHEFLD_4 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_5 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_6 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_7 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_8 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_9 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_10 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_11 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_12 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_13 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_14 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_15 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_16 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_17 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_18 | 1.0 | 0.0 | 1.0 |
| PBBHEFLD_19 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_20 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_21 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_22 | 1.0 | 0.0 | 1.0 |
| PBBHEFLD_23 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_24 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_25 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_26 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_27 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_28 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_29 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_30 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_31 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_32 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_33 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_34 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_35 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_36 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_37 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_38 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_39 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_40 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_41 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_42 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_43 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_44 | 1.0 | 0.0 | 1.0 |
| PBBHEFLD_45 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_46 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_47 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_48 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_49 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_50 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_51 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_52 | 1.0 | 0.0 | 1.0 |
| PBBHEFLD_53 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_54 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_55 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_56 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_57 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_58 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_59 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_60 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_61 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_62 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_63 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_64 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_65 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_67 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_68 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_69 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_70 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_71 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_72 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_73 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_74 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_75 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_76 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_77 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_78 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_79 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_80 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_81 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_82 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_83 | 0.0 | 1.0 | 0.0 |
| PBBHEFLD_84 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PBBHEFLD_69 | 54974 | 63159 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)