Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NDHLHBNA_19 | 106731 | 108194 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| NDHLHBNA_19 | 105391 | 106605 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NDHLHBNA_19 | 106731 | 108191 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| NDHLHBNA_19 | 105391 | 106614 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NDHLHBNA_1 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_2 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_3 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_4 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_5 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_6 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_7 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_8 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_9 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_10 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_11 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_12 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_13 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_14 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_15 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_16 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_17 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_18 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_19 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_20 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_21 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_22 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_23 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_24 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_25 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_26 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_27 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_28 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_29 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_30 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_31 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_32 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_33 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_34 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_35 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_36 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_37 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_38 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_39 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_40 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_41 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_42 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_43 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_44 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_45 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_46 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_47 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_48 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_49 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_50 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_51 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_52 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_53 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_54 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_55 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_56 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_57 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_58 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_59 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_60 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_61 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_62 | 1.0 | 0.0 | 1.0 |
| NDHLHBNA_63 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_64 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_65 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_66 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_67 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_68 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_69 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_70 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_71 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_72 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_73 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_74 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_75 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_76 | 1.0 | 0.0 | 1.0 |
| NDHLHBNA_77 | 1.0 | 0.0 | 1.0 |
| NDHLHBNA_78 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_79 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_80 | 1.0 | 0.0 | 1.0 |
| NDHLHBNA_81 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_82 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_83 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_84 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_85 | 0.0 | 1.0 | 0.0 |
| NDHLHBNA_86 | 1.0 | 0.0 | 1.0 |
| NDHLHBNA_88 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NDHLHBNA_15 | 19781 | 27966 | False | Unknown | VOG0572, |
| NDHLHBNA_39 | 3965 | 12711 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)