Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 1 | 7.07 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCPNMBLA_32 | 48436 | 49236 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| LCPNMBLA_32 | 46991 | 48130 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| LCPNMBLA_32 | 45656 | 46792 | tet(X) | ARO:3000205 | tet(X) | 99.21 | 97.42 | M37699.1 |
| LCPNMBLA_32 | 44617 | 45480 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| LCPNMBLA_21 | 32868 | 34073 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| LCPNMBLA_91 | 1084 | 3057 | tet(Q) | ARO:3000191 | tet(Q) | 96.96 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LCPNMBLA_32 | 48436 | 49236 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| LCPNMBLA_32 | 45656 | 46822 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.74 | 100.00 | M37699 |
| LCPNMBLA_91 | 1132 | 3057 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.58 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCPNMBLA_32 | 44620 | 45480 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| LCPNMBLA_32 | 46994 | 48130 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| LCPNMBLA_32 | 45659 | 46822 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| LCPNMBLA_32 | 48436 | 49233 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| LCPNMBLA_91 | 1132 | 3054 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_004293868.1 |
| LCPNMBLA_21 | 34098 | 34607 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| LCPNMBLA_21 | 32868 | 34070 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LCPNMBLA_75 | 11659 | 13239 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LCPNMBLA_1 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_2 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_3 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_4 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_5 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_6 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_7 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_8 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_9 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_10 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_11 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_12 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_13 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_14 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_15 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_16 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_17 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_18 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_19 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_20 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_21 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_22 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_23 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_24 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_25 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_26 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_27 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_28 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_29 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_30 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_31 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_32 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_33 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_34 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_35 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_36 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_37 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_38 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_39 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_40 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_41 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_42 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_43 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_44 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_45 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_46 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_47 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_48 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_49 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_50 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_51 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_52 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_53 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_54 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_55 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_56 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_57 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_58 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_59 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_60 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_61 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_62 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_63 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_64 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_65 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_66 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_67 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_68 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_69 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_70 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_71 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_72 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_73 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_74 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_75 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_76 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_77 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_78 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_79 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_80 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_81 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_82 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_83 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_84 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_85 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_86 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_87 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_88 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_89 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_90 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_91 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_92 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_93 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_94 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_95 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_96 | 0.0 | 1.0 | 0.0 |
| LCPNMBLA_97 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_98 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_99 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_100 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_101 | 1.0 | 0.0 | 1.0 |
| LCPNMBLA_102 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LCPNMBLA_26 | 40541 | 50292 | True | Unknown | VOG8253, |
Phigaro v2.4.0 (Database: Jan. 2024 release)