Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 1 | 6.08 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AJBDLMPH_25 | 75688 | 76488 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| AJBDLMPH_25 | 74243 | 75382 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| AJBDLMPH_25 | 72908 | 74044 | tet(X) | ARO:3000205 | tet(X) | 99.21 | 97.42 | M37699.1 |
| AJBDLMPH_25 | 71869 | 72732 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| AJBDLMPH_4 | 52416 | 53621 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AJBDLMPH_25 | 75688 | 76488 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| AJBDLMPH_25 | 72908 | 74074 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.74 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AJBDLMPH_25 | 71872 | 72732 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| AJBDLMPH_25 | 74246 | 75382 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| AJBDLMPH_25 | 72911 | 74074 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| AJBDLMPH_25 | 75688 | 76485 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| AJBDLMPH_4 | 53646 | 54155 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| AJBDLMPH_4 | 52416 | 53618 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AJBDLMPH_61 | 6510 | 4930 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AJBDLMPH_1 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_2 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_3 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_4 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_5 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_6 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_7 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_8 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_9 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_10 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_11 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_12 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_13 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_14 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_15 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_16 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_17 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_18 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_19 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_20 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_21 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_22 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_23 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_24 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_25 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_26 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_27 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_28 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_29 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_30 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_31 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_32 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_33 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_34 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_35 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_36 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_37 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_38 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_39 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_40 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_41 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_42 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_43 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_44 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_45 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_46 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_47 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_48 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_49 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_50 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_51 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_52 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_53 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_54 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_55 | 1.0 | 0.0 | 1.0 |
| AJBDLMPH_56 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_57 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_58 | 1.0 | 0.0 | 1.0 |
| AJBDLMPH_59 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_60 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_61 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_62 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_63 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_64 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_65 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_66 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_67 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_68 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_69 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_70 | 1.0 | 0.0 | 1.0 |
| AJBDLMPH_71 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_72 | 1.0 | 0.0 | 1.0 |
| AJBDLMPH_73 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_74 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_75 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_76 | 1.0 | 0.0 | 1.0 |
| AJBDLMPH_77 | 1.0 | 0.0 | 1.0 |
| AJBDLMPH_78 | 1.0 | 0.0 | 1.0 |
| AJBDLMPH_79 | 1.0 | 0.0 | 1.0 |
| AJBDLMPH_81 | 0.0 | 1.0 | 0.0 |
| AJBDLMPH_82 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AJBDLMPH_27 | 24103 | 33854 | True | Unknown | VOG8336, |
Phigaro v2.4.0 (Database: Jan. 2024 release)