Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 1 | 6.08 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FACPMCLC_11 | 53509 | 54714 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| FACPMCLC_76 | 6436 | 7299 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| FACPMCLC_76 | 5124 | 6260 | tet(X) | ARO:3000205 | tet(X) | 99.21 | 97.42 | M37699.1 |
| FACPMCLC_76 | 3786 | 4925 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| FACPMCLC_76 | 2680 | 3480 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FACPMCLC_76 | 2680 | 3480 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| FACPMCLC_76 | 5094 | 6260 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.74 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FACPMCLC_76 | 6436 | 7296 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| FACPMCLC_76 | 3786 | 4922 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| FACPMCLC_76 | 5094 | 6257 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| FACPMCLC_76 | 2683 | 3480 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| FACPMCLC_11 | 52975 | 53484 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| FACPMCLC_11 | 53512 | 54714 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FACPMCLC_72 | 6510 | 4930 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FACPMCLC_1 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_2 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_3 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_4 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_5 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_6 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_7 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_8 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_9 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_10 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_11 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_12 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_13 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_14 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_15 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_16 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_17 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_18 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_19 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_20 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_21 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_22 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_23 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_24 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_25 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_26 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_27 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_28 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_29 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_30 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_31 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_32 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_33 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_34 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_35 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_36 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_37 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_38 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_39 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_40 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_41 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_42 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_43 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_44 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_45 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_46 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_47 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_48 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_49 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_50 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_51 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_52 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_53 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_54 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_55 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_56 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_57 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_58 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_59 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_60 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_61 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_62 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_63 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_64 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_65 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_66 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_67 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_68 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_69 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_70 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_71 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_72 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_73 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_74 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_75 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_76 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_77 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_78 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_79 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_80 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_81 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_82 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_83 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_84 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_85 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_86 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_87 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_89 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_90 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_91 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_92 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_93 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_94 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_95 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_96 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_97 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_98 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_99 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_100 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_101 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_102 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_103 | 1.0 | 0.0 | 1.0 |
| FACPMCLC_104 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_105 | 0.0 | 1.0 | 0.0 |
| FACPMCLC_106 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FACPMCLC_31 | 23800 | 33551 | True | Unknown | VOG8336, |
Phigaro v2.4.0 (Database: Jan. 2024 release)