Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 1 | 6.08 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KPNADPNA_11 | 53509 | 54714 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| KPNADPNA_36 | 6861 | 7724 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| KPNADPNA_36 | 5549 | 6685 | tet(X) | ARO:3000205 | tet(X) | 99.21 | 97.42 | M37699.1 |
| KPNADPNA_36 | 4211 | 5350 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| KPNADPNA_36 | 3105 | 3905 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KPNADPNA_36 | 3105 | 3905 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| KPNADPNA_36 | 5519 | 6685 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.74 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KPNADPNA_36 | 6861 | 7721 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| KPNADPNA_36 | 4211 | 5347 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| KPNADPNA_36 | 5519 | 6682 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| KPNADPNA_36 | 3108 | 3905 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| KPNADPNA_11 | 52975 | 53484 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| KPNADPNA_11 | 53512 | 54714 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KPNADPNA_62 | 6510 | 4930 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KPNADPNA_1 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_2 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_3 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_4 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_5 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_6 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_7 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_8 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_9 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_10 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_11 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_12 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_13 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_14 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_15 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_16 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_17 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_18 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_19 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_20 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_21 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_22 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_23 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_24 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_25 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_26 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_27 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_28 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_29 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_30 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_31 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_32 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_33 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_34 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_35 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_36 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_37 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_38 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_39 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_40 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_41 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_42 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_43 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_44 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_45 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_46 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_47 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_48 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_49 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_50 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_51 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_52 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_53 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_54 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_55 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_56 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_57 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_58 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_59 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_60 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_61 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_62 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_63 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_64 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_65 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_66 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_67 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_68 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_69 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_70 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_71 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_72 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_73 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_74 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_75 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_76 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_77 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_78 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_79 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_80 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_81 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_82 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_83 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_84 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_85 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_86 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_87 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_88 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_89 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_90 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_91 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_92 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_93 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_94 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_95 | 1.0 | 0.0 | 1.0 |
| KPNADPNA_96 | 0.0 | 1.0 | 0.0 |
| KPNADPNA_98 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KPNADPNA_26 | 24091 | 33842 | True | Unknown | VOG8336, |
| KPNADPNA_50 | 4531 | 24185 | False | Siphoviridae | VOG3654, |
| KPNADPNA_52 | 12646 | 16023 | False | Siphoviridae | VOG7004, |
Phigaro v2.4.0 (Database: Jan. 2024 release)