Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JBJILNEG_1 | 732788 | 733522 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JBJILNEG_1 | 732788 | 733522 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| JBJILNEG_1 | 734294 | 735757 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| JBJILNEG_1 | 735883 | 737097 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JBJILNEG_1 | 732791 | 733522 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| JBJILNEG_1 | 734297 | 735757 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| JBJILNEG_1 | 735874 | 737097 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JBJILNEG_1 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_2 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_3 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_4 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_5 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_6 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_7 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_8 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_9 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_10 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_11 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_12 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_13 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_14 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_15 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_16 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_17 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_18 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_19 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_20 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_21 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_22 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_23 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_24 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_25 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_26 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_27 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_28 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_29 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_30 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_31 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_32 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_33 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_34 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_35 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_36 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_37 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_38 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_39 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_40 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_41 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_42 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_43 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_44 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_45 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_46 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_47 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_48 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_49 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_50 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_51 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_52 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_53 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_54 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_55 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_56 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_57 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_58 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_59 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_60 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_61 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_62 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_63 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_64 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_65 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_66 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_67 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_68 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_69 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_70 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_71 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_72 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_73 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_74 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_75 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_76 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_77 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_78 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_79 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_80 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_81 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_82 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_83 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_84 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_85 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_86 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_87 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_88 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_89 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_90 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_91 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_92 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_93 | 0.0 | 1.0 | 0.0 |
| JBJILNEG_94 | 1.0 | 0.0 | 1.0 |
| JBJILNEG_95 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JBJILNEG_3 | 226593 | 234778 | False | Unknown | VOG4573, |
| JBJILNEG_23 | 17846 | 54233 | True | Siphoviridae | VOG0221, |
| JBJILNEG_25 | 5678 | 28719 | False | Siphoviridae | VOG3654, |
| JBJILNEG_28 | 16226 | 27863 | False | Myoviridae | VOG0822, |
| JBJILNEG_33 | 3965 | 12711 | False | Unknown | VOG0572, |
| JBJILNEG_34 | 11343 | 28394 | False | Siphoviridae | VOG10608, |
Phigaro v2.4.0 (Database: Jan. 2024 release)