Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJDMIAHE_15 | 65524 | 66489 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PJDMIAHE_15 | 65524 | 66489 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| PJDMIAHE_15 | 65524 | 66489 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| PJDMIAHE_15 | 65524 | 66489 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| PJDMIAHE_15 | 65524 | 66489 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PJDMIAHE_15 | 65524 | 66486 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PJDMIAHE_12 | 47051 | 48631 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 87.29 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PJDMIAHE_1 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_2 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_3 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_4 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_5 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_6 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_7 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_8 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_9 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_10 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_11 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_12 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_13 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_14 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_15 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_16 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_17 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_18 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_19 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_20 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_21 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_22 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_23 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_24 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_25 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_26 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_27 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_28 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_29 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_30 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_31 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_32 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_33 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_34 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_35 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_36 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_37 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_38 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_39 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_40 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_41 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_42 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_43 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_44 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_45 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_46 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_47 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_48 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_49 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_50 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_51 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_52 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_53 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_54 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_55 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_56 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_57 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_58 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_59 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_60 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_61 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_62 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_63 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_64 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_65 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_66 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_67 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_68 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_69 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_70 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_71 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_72 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_73 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_74 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_75 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_76 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_77 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_78 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_79 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_80 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_81 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_82 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_83 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_84 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_85 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_86 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_87 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_88 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_89 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_90 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_91 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_92 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_93 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_94 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_95 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_96 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_97 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_98 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_99 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_100 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_101 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_102 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_103 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_104 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_105 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_106 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_107 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_108 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_109 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_110 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_111 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_112 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_113 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_114 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_115 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_116 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_117 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_118 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_119 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_120 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_121 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_122 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_123 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_124 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_125 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_126 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_127 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_128 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_129 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_130 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_131 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_132 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_133 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_134 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_135 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_136 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_137 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_138 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_139 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_140 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_141 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_142 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_143 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_144 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_145 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_146 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_147 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_148 | 1.0 | 0.0 | 1.0 |
| PJDMIAHE_149 | 0.0 | 1.0 | 0.0 |
| PJDMIAHE_150 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PJDMIAHE_38 | 33925 | 48668 | False | Siphoviridae | VOG5096, |
Phigaro v2.4.0 (Database: Jan. 2024 release)