Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EBCODBBE_25 | 61994 | 62959 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EBCODBBE_25 | 61994 | 62959 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| EBCODBBE_25 | 61994 | 62959 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| EBCODBBE_25 | 61994 | 62959 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| EBCODBBE_25 | 61994 | 62959 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EBCODBBE_25 | 61997 | 62959 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EBCODBBE_22 | 31598 | 30018 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EBCODBBE_1 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_2 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_3 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_4 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_5 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_6 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_7 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_8 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_9 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_10 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_11 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_12 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_13 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_14 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_15 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_16 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_17 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_18 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_19 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_20 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_21 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_22 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_23 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_24 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_25 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_26 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_27 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_28 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_29 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_30 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_31 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_32 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_33 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_34 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_35 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_36 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_37 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_38 | 1.0 | 0.0 | 1.0 |
| EBCODBBE_39 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_40 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_41 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_42 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_43 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_44 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_45 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_46 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_47 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_48 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_49 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_50 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_51 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_52 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_53 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_54 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_55 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_56 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_57 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_58 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_59 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_60 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_61 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_62 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_63 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_64 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_65 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_66 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_67 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_68 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_69 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_70 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_71 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_72 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_73 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_74 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_75 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_76 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_77 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_78 | 1.0 | 0.0 | 1.0 |
| EBCODBBE_79 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_80 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_81 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_82 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_83 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_84 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_85 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_86 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_87 | 1.0 | 0.0 | 1.0 |
| EBCODBBE_88 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_89 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_90 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_91 | 1.0 | 0.0 | 1.0 |
| EBCODBBE_92 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_93 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_94 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_95 | 0.0 | 1.0 | 0.0 |
| EBCODBBE_96 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EBCODBBE_11 | 71957 | 80753 | False | Unknown | VOG0327, |
Phigaro v2.4.0 (Database: Jan. 2024 release)