Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HBNGCOOE_28 | 65524 | 66489 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HBNGCOOE_28 | 65524 | 66489 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| HBNGCOOE_28 | 65524 | 66489 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| HBNGCOOE_28 | 65524 | 66489 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| HBNGCOOE_28 | 65524 | 66489 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HBNGCOOE_28 | 65524 | 66486 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HBNGCOOE_63 | 22518 | 24098 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 87.29 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HBNGCOOE_1 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_2 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_3 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_4 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_5 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_6 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_7 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_8 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_9 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_10 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_11 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_12 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_13 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_14 | 1.0 | 0.0 | 1.0 |
| HBNGCOOE_15 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_16 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_17 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_18 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_19 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_20 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_21 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_22 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_23 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_24 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_25 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_26 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_27 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_28 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_29 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_30 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_31 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_32 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_33 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_34 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_35 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_36 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_37 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_38 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_39 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_40 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_41 | 1.0 | 0.0 | 1.0 |
| HBNGCOOE_42 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_43 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_44 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_45 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_46 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_47 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_48 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_49 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_50 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_51 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_52 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_53 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_54 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_55 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_56 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_57 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_58 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_59 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_60 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_61 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_62 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_63 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_64 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_65 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_66 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_67 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_68 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_69 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_70 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_71 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_72 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_73 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_74 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_75 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_76 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_77 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_78 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_79 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_80 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_81 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_82 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_83 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_84 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_85 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_86 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_87 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_88 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_89 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_90 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_91 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_92 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_93 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_94 | 0.0 | 1.0 | 0.0 |
| HBNGCOOE_95 | 1.0 | 0.0 | 1.0 |
| HBNGCOOE_96 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)