Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BKDIPHHN_11 | 49912 | 50877 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BKDIPHHN_11 | 49912 | 50877 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| BKDIPHHN_11 | 49912 | 50877 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| BKDIPHHN_11 | 49912 | 50877 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| BKDIPHHN_11 | 49912 | 50877 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BKDIPHHN_11 | 49915 | 50877 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BKDIPHHN_13 | 104088 | 102508 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 87.29 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BKDIPHHN_1 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_2 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_3 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_4 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_5 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_6 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_7 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_8 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_9 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_10 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_11 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_12 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_13 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_14 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_15 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_16 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_17 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_18 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_19 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_20 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_21 | 1.0 | 0.0 | 1.0 |
| BKDIPHHN_22 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_23 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_24 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_25 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_26 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_27 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_28 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_29 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_30 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_31 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_32 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_33 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_34 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_35 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_36 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_37 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_38 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_39 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_40 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_41 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_42 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_43 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_44 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_45 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_46 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_47 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_48 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_49 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_50 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_51 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_52 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_53 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_54 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_55 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_56 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_57 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_58 | 1.0 | 0.0 | 1.0 |
| BKDIPHHN_59 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_60 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_61 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_62 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_63 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_64 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_65 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_66 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_67 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_68 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_69 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_70 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_71 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_72 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_73 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_74 | 1.0 | 0.0 | 1.0 |
| BKDIPHHN_75 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_76 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_77 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_78 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_79 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_80 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_81 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_82 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_83 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_84 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_85 | 1.0 | 0.0 | 1.0 |
| BKDIPHHN_86 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_87 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_88 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_89 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_90 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_91 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_92 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_93 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_94 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_95 | 1.0 | 0.0 | 1.0 |
| BKDIPHHN_96 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_97 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_98 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_99 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_100 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_101 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_102 | 1.0 | 0.0 | 1.0 |
| BKDIPHHN_103 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_104 | 1.0 | 0.0 | 1.0 |
| BKDIPHHN_105 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_106 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_107 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_108 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_109 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_110 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_111 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_112 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_113 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_114 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_115 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_116 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_117 | 1.0 | 0.0 | 1.0 |
| BKDIPHHN_118 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_119 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_120 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_121 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_122 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_123 | 1.0 | 0.0 | 1.0 |
| BKDIPHHN_124 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_125 | 1.0 | 0.0 | 1.0 |
| BKDIPHHN_126 | 1.0 | 0.0 | 1.0 |
| BKDIPHHN_127 | 1.0 | 0.0 | 1.0 |
| BKDIPHHN_128 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_129 | 1.0 | 0.0 | 1.0 |
| BKDIPHHN_130 | 1.0 | 0.0 | 1.0 |
| BKDIPHHN_131 | 0.0 | 1.0 | 0.0 |
| BKDIPHHN_132 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BKDIPHHN_33 | 16513 | 31256 | False | Siphoviridae | VOG4564, |
Phigaro v2.4.0 (Database: Jan. 2024 release)