Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHMKDKEP_4 | 115401 | 117416 | tet(W) | ARO:3000194 | tet(W) | 98.28 | 105.01 | AJ222769.3 |
| JHMKDKEP_24 | 28900 | 29463 | lnuC | ARO:3002837 | lnuC | 98.17 | 114.02 | AY928180.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JHMKDKEP_24 | 28900 | 29394 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
| JHMKDKEP_4 | 115401 | 117320 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.49 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHMKDKEP_4 | 115404 | 117320 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 98.28 | 100.00 | WP_002586627.1 |
| JHMKDKEP_24 | 28903 | 29394 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JHMKDKEP_1 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_2 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_3 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_4 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_5 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_6 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_7 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_8 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_9 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_10 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_11 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_12 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_13 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_14 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_15 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_16 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_17 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_18 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_19 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_20 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_21 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_22 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_23 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_24 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_25 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_26 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_27 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_28 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_29 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_30 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_31 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_32 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_33 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_34 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_35 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_36 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_37 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_38 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_39 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_40 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_41 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_42 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_43 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_44 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_45 | 1.0 | 0.0 | 1.0 |
| JHMKDKEP_46 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_47 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_48 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_49 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_50 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_51 | 1.0 | 0.0 | 1.0 |
| JHMKDKEP_52 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_53 | 1.0 | 0.0 | 1.0 |
| JHMKDKEP_54 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_55 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_56 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_57 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_58 | 1.0 | 0.0 | 1.0 |
| JHMKDKEP_59 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_60 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_61 | 1.0 | 0.0 | 1.0 |
| JHMKDKEP_62 | 1.0 | 0.0 | 1.0 |
| JHMKDKEP_63 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_64 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_65 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_66 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_67 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_68 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_69 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_70 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_71 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_72 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_73 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_74 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_75 | 1.0 | 0.0 | 1.0 |
| JHMKDKEP_76 | 1.0 | 0.0 | 1.0 |
| JHMKDKEP_77 | 1.0 | 0.0 | 1.0 |
| JHMKDKEP_78 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_79 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_80 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_81 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_82 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_83 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_84 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_85 | 1.0 | 0.0 | 1.0 |
| JHMKDKEP_86 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_87 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_88 | 1.0 | 0.0 | 1.0 |
| JHMKDKEP_89 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_90 | 0.0 | 1.0 | 0.0 |
| JHMKDKEP_91 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JHMKDKEP_3 | 37492 | 46319 | False | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)