Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHDPEPAM_31 | 65524 | 66489 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CHDPEPAM_31 | 65524 | 66489 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| CHDPEPAM_31 | 65524 | 66489 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| CHDPEPAM_31 | 65524 | 66489 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| CHDPEPAM_31 | 65524 | 66489 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CHDPEPAM_31 | 65524 | 66486 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CHDPEPAM_74 | 22518 | 24098 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 87.29 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CHDPEPAM_1 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_2 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_3 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_4 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_5 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_6 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_7 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_8 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_9 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_10 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_11 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_12 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_13 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_14 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_15 | 1.0 | 0.0 | 1.0 |
| CHDPEPAM_16 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_17 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_18 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_19 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_20 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_21 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_22 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_23 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_24 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_25 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_26 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_27 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_28 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_29 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_30 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_31 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_32 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_33 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_34 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_35 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_36 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_37 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_38 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_39 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_40 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_41 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_42 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_43 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_44 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_45 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_46 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_47 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_48 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_49 | 1.0 | 0.0 | 1.0 |
| CHDPEPAM_50 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_51 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_52 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_53 | 1.0 | 0.0 | 1.0 |
| CHDPEPAM_54 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_55 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_56 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_57 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_58 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_59 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_60 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_61 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_62 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_63 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_64 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_65 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_66 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_67 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_68 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_69 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_70 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_71 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_72 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_73 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_74 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_75 | 1.0 | 0.0 | 1.0 |
| CHDPEPAM_76 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_77 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_78 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_79 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_80 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_81 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_82 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_83 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_84 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_85 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_86 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_87 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_88 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_89 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_90 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_91 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_92 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_93 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_94 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_95 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_96 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_97 | 1.0 | 0.0 | 1.0 |
| CHDPEPAM_98 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_99 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_100 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_101 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_102 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_103 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_104 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_105 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_106 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_107 | 1.0 | 0.0 | 1.0 |
| CHDPEPAM_108 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_109 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_110 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_111 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_112 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_113 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_114 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_115 | 1.0 | 0.0 | 1.0 |
| CHDPEPAM_116 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_117 | 1.0 | 0.0 | 1.0 |
| CHDPEPAM_118 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_119 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_120 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_121 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_122 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_123 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_124 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_125 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_126 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_127 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_128 | 1.0 | 0.0 | 1.0 |
| CHDPEPAM_129 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_130 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_131 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_132 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_133 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_134 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_135 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_136 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_137 | 1.0 | 0.0 | 1.0 |
| CHDPEPAM_138 | 0.0 | 1.0 | 0.0 |
| CHDPEPAM_139 | 1.0 | 0.0 | 1.0 |
| CHDPEPAM_140 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CHDPEPAM_71 | 2310 | 9693 | False | Siphoviridae | VOG5156, |
Phigaro v2.4.0 (Database: Jan. 2024 release)