Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LDCHJKHI_12 | 52408 | 53613 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LDCHJKHI_12 | 53638 | 54147 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| LDCHJKHI_12 | 52408 | 53610 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LDCHJKHI_55 | 6506 | 4926 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LDCHJKHI_1 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_2 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_3 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_4 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_5 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_6 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_7 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_8 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_9 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_10 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_11 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_12 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_13 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_14 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_15 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_16 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_17 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_18 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_19 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_20 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_21 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_22 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_23 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_24 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_25 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_26 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_27 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_28 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_29 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_30 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_31 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_32 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_33 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_34 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_35 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_36 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_37 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_38 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_39 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_40 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_41 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_42 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_43 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_44 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_45 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_46 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_47 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_48 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_49 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_50 | 1.0 | 0.0 | 1.0 |
| LDCHJKHI_51 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_52 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_53 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_54 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_55 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_56 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_57 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_58 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_59 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_60 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_61 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_62 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_63 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_64 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_65 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_66 | 1.0 | 0.0 | 1.0 |
| LDCHJKHI_67 | 1.0 | 0.0 | 1.0 |
| LDCHJKHI_68 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_69 | 1.0 | 0.0 | 1.0 |
| LDCHJKHI_70 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_71 | 1.0 | 0.0 | 1.0 |
| LDCHJKHI_72 | 1.0 | 0.0 | 1.0 |
| LDCHJKHI_73 | 1.0 | 0.0 | 1.0 |
| LDCHJKHI_74 | 1.0 | 0.0 | 1.0 |
| LDCHJKHI_75 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_76 | 1.0 | 0.0 | 1.0 |
| LDCHJKHI_77 | 1.0 | 0.0 | 1.0 |
| LDCHJKHI_78 | 1.0 | 0.0 | 1.0 |
| LDCHJKHI_79 | 1.0 | 0.0 | 1.0 |
| LDCHJKHI_80 | 0.0 | 1.0 | 0.0 |
| LDCHJKHI_81 | 1.0 | 0.0 | 1.0 |
| LDCHJKHI_82 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LDCHJKHI_18 | 23800 | 34658 | True | Unknown | VOG8336, |
Phigaro v2.4.0 (Database: Jan. 2024 release)