Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDKOEPIA_28 | 10822 | 11787 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MDKOEPIA_28 | 10822 | 11787 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| MDKOEPIA_28 | 10822 | 11787 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| MDKOEPIA_28 | 10822 | 11787 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| MDKOEPIA_28 | 10822 | 11787 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDKOEPIA_28 | 10825 | 11787 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MDKOEPIA_24 | 33468 | 31888 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 87.29 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MDKOEPIA_1 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_2 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_3 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_4 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_5 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_6 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_7 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_8 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_9 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_10 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_11 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_12 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_13 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_14 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_15 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_16 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_17 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_18 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_19 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_20 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_21 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_22 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_23 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_24 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_25 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_26 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_27 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_28 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_29 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_30 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_31 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_32 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_33 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_34 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_35 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_36 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_37 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_38 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_39 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_40 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_41 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_42 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_43 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_44 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_45 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_46 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_47 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_48 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_49 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_50 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_51 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_52 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_53 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_54 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_55 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_56 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_57 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_58 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_59 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_60 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_61 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_62 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_63 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_64 | 1.0 | 0.0 | 1.0 |
| MDKOEPIA_65 | 1.0 | 0.0 | 1.0 |
| MDKOEPIA_66 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_67 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_68 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_69 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_70 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_71 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_72 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_73 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_74 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_75 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_76 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_77 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_78 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_79 | 1.0 | 0.0 | 1.0 |
| MDKOEPIA_80 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_81 | 0.0 | 1.0 | 0.0 |
| MDKOEPIA_82 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MDKOEPIA_3 | 36765 | 53164 | False | Siphoviridae | VOG5235, |
| MDKOEPIA_36 | 21310 | 34401 | False | Siphoviridae | VOG7011, |
Phigaro v2.4.0 (Database: Jan. 2024 release)