Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJNIHJGK_36 | 6280 | 7416 | tet(X) | ARO:3000205 | tet(X) | 99.74 | 97.42 | M37699.1 |
| GJNIHJGK_36 | 5267 | 6067 | ErmF | ARO:3000498 | ErmF | 99.62 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GJNIHJGK_36 | 5267 | 6067 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | M17808 |
| GJNIHJGK_36 | 6280 | 7446 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.91 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GJNIHJGK_36 | 5267 | 6064 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| GJNIHJGK_36 | 6283 | 7446 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GJNIHJGK_1 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_2 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_3 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_4 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_5 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_6 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_7 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_8 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_9 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_10 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_11 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_12 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_13 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_14 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_15 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_16 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_17 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_18 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_19 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_20 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_21 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_22 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_23 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_24 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_25 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_26 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_27 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_28 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_29 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_30 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_31 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_32 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_33 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_34 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_35 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_36 | 1.0 | 0.0 | 1.0 |
| GJNIHJGK_37 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_38 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_39 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_40 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_41 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_42 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_43 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_44 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_45 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_46 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_47 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_48 | 1.0 | 0.0 | 1.0 |
| GJNIHJGK_49 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_50 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_51 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_52 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_53 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_54 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_55 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_56 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_57 | 1.0 | 0.0 | 1.0 |
| GJNIHJGK_58 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_59 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_60 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_61 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_62 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_63 | 1.0 | 0.0 | 1.0 |
| GJNIHJGK_64 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_65 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_66 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_67 | 1.0 | 0.0 | 1.0 |
| GJNIHJGK_68 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_69 | 1.0 | 0.0 | 1.0 |
| GJNIHJGK_70 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_71 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_72 | 1.0 | 0.0 | 1.0 |
| GJNIHJGK_73 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_74 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_75 | 1.0 | 0.0 | 1.0 |
| GJNIHJGK_76 | 1.0 | 0.0 | 1.0 |
| GJNIHJGK_77 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_78 | 1.0 | 0.0 | 1.0 |
| GJNIHJGK_79 | 0.0 | 1.0 | 0.0 |
| GJNIHJGK_80 | 1.0 | 0.0 | 1.0 |
| GJNIHJGK_81 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GJNIHJGK_28 | 57635 | 65179 | False | Siphoviridae | VOG6488, |
Phigaro v2.4.0 (Database: Jan. 2024 release)