Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GMCGOJKJ_18 | 314 | 1108 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 100.00 | 100.00 | CP004067.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GMCGOJKJ_18 | 314 | 1108 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 100.00 | 100.00 | M26832 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GMCGOJKJ_18 | 317 | 1108 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | EXACTX | 100.00 | 100.00 | WP_001096887.1 |
| GMCGOJKJ_18 | 1204 | 1533 | sat4 | streptothricin N-acetyltransferase Sat4 | PARTIALX | 100.00 | 61.11 | WP_000627290.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GMCGOJKJ_1 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_2 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_3 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_4 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_5 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_6 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_7 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_8 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_9 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_10 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_11 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_12 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_13 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_14 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_15 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_16 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_17 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_18 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_19 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_20 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_21 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_22 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_23 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_24 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_25 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_26 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_27 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_28 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_29 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_30 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_31 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_32 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_33 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_34 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_35 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_36 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_37 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_38 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_39 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_40 | 1.0 | 0.0 | 1.0 |
| GMCGOJKJ_41 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_42 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_43 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_44 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_45 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_46 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_47 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_48 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_49 | 1.0 | 0.0 | 1.0 |
| GMCGOJKJ_50 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_51 | 1.0 | 0.0 | 1.0 |
| GMCGOJKJ_52 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_53 | 1.0 | 0.0 | 1.0 |
| GMCGOJKJ_54 | 1.0 | 0.0 | 1.0 |
| GMCGOJKJ_55 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_56 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_57 | 1.0 | 0.0 | 1.0 |
| GMCGOJKJ_58 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_59 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_60 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_61 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_62 | 1.0 | 0.0 | 1.0 |
| GMCGOJKJ_63 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_64 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_65 | 1.0 | 0.0 | 1.0 |
| GMCGOJKJ_66 | 1.0 | 0.0 | 1.0 |
| GMCGOJKJ_67 | 1.0 | 0.0 | 1.0 |
| GMCGOJKJ_68 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_69 | 0.0 | 1.0 | 0.0 |
| GMCGOJKJ_70 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)