Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FFFDHAFJ_13 | 79384 | 81330 | tet(Q) | ARO:3000191 | tet(Q) | 98.90 | 98.63 | Z21523.1 |
| FFFDHAFJ_21 | 58787 | 59689 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FFFDHAFJ_21 | 58787 | 59689 | cepA | Unknown Beta-lactam | 99.56 | 100.00 | FR688022 |
| FFFDHAFJ_13 | 79384 | 81296 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.32 | 99.33 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FFFDHAFJ_21 | 58790 | 59689 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| FFFDHAFJ_13 | 79384 | 81297 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.90 | 99.53 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FFFDHAFJ_1 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_2 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_3 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_4 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_5 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_6 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_7 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_8 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_9 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_10 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_11 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_12 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_13 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_14 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_15 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_16 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_17 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_18 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_19 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_20 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_21 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_22 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_23 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_24 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_25 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_26 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_27 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_28 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_29 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_30 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_31 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_32 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_33 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_34 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_35 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_36 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_37 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_38 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_39 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_40 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_41 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_42 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_43 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_44 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_45 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_46 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_47 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_48 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_49 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_50 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_51 | 1.0 | 0.0 | 1.0 |
| FFFDHAFJ_52 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_53 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_54 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_55 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_56 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_57 | 1.0 | 0.0 | 1.0 |
| FFFDHAFJ_58 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_59 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_60 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_61 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_62 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_63 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_64 | 1.0 | 0.0 | 1.0 |
| FFFDHAFJ_65 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_66 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_67 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_68 | 1.0 | 0.0 | 1.0 |
| FFFDHAFJ_69 | 1.0 | 0.0 | 1.0 |
| FFFDHAFJ_70 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_71 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_72 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_73 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_74 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_75 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_76 | 1.0 | 0.0 | 1.0 |
| FFFDHAFJ_77 | 1.0 | 0.0 | 1.0 |
| FFFDHAFJ_78 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_79 | 1.0 | 0.0 | 1.0 |
| FFFDHAFJ_80 | 1.0 | 0.0 | 1.0 |
| FFFDHAFJ_81 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_82 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_83 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_84 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_85 | 1.0 | 0.0 | 1.0 |
| FFFDHAFJ_86 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_87 | 1.0 | 0.0 | 1.0 |
| FFFDHAFJ_88 | 0.0 | 1.0 | 0.0 |
| FFFDHAFJ_89 | 1.0 | 0.0 | 1.0 |
| FFFDHAFJ_90 | 1.0 | 0.0 | 1.0 |
| FFFDHAFJ_91 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FFFDHAFJ_10 | 6869 | 15030 | False | Siphoviridae | VOG0704, |
Phigaro v2.4.0 (Database: Jan. 2024 release)