Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GKIEGKNF_15 | 120751 | 121653 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GKIEGKNF_15 | 120751 | 121653 | cepA | Unknown Beta-lactam | 99.78 | 100.00 | FR688022 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GKIEGKNF_15 | 120751 | 121650 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GKIEGKNF_1 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_2 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_3 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_4 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_5 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_6 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_7 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_8 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_9 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_10 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_11 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_12 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_13 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_14 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_15 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_16 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_17 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_18 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_19 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_20 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_21 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_22 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_23 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_24 | 1.0 | 0.0 | 1.0 |
| GKIEGKNF_25 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_26 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_27 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_28 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_29 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_30 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_31 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_32 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_33 | 1.0 | 0.0 | 1.0 |
| GKIEGKNF_34 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_35 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_36 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_37 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_38 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_39 | 1.0 | 0.0 | 1.0 |
| GKIEGKNF_40 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_41 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_42 | 0.0 | 1.0 | 0.0 |
| GKIEGKNF_43 | 1.0 | 0.0 | 1.0 |
| GKIEGKNF_44 | 1.0 | 0.0 | 1.0 |
| GKIEGKNF_45 | 1.0 | 0.0 | 1.0 |
| GKIEGKNF_46 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GKIEGKNF_26 | 39545 | 48091 | False | Siphoviridae | VOG4841, |
Phigaro v2.4.0 (Database: Jan. 2024 release)