Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PAGGOGBC_10 | 18679 | 20598 | tet(32) | ARO:3000196 | tet(32) | 98.75 | 100.00 | EU722333.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PAGGOGBC_10 | 18679 | 20598 | tet(32) | Doxycycline, Tetracycline, Minocycline | 99.95 | 100.00 | EF626943 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PAGGOGBC_10 | 18682 | 20598 | tet(32) | tetracycline resistance ribosomal protection protein Tet(32) | EXACTX | 100.00 | 100.00 | WP_002602099.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PAGGOGBC_1 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_2 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_3 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_4 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_5 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_6 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_7 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_8 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_9 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_10 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_11 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_12 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_13 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_14 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_15 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_16 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_17 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_18 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_19 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_20 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_21 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_22 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_23 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_24 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_25 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_26 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_27 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_28 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_29 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_30 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_31 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_32 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_33 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_34 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_35 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_36 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_37 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_38 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_39 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_40 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_41 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_42 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_43 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_44 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_45 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_46 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_47 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_48 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_49 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_50 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_51 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_52 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_53 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_54 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_55 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_56 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_57 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_58 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_59 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_60 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_61 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_62 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_64 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_65 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_66 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_67 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_68 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_69 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_70 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_71 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_72 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_73 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_74 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_75 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_76 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_77 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_78 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_79 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_80 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_81 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_82 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_83 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_84 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_85 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_86 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_87 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_88 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_89 | 0.0 | 1.0 | 0.0 |
| PAGGOGBC_90 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_91 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_92 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_93 | 1.0 | 0.0 | 1.0 |
| PAGGOGBC_94 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PAGGOGBC_10 | 11811 | 21960 | False | Unknown | VOG0189, |
| PAGGOGBC_13 | 31597 | 42396 | False | Siphoviridae | VOG0701, |
Phigaro v2.4.0 (Database: Jan. 2024 release)