Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NMEGLINO_65 | 9899 | 10789 | CblA-1 | ARO:3002999 | CblA-1 | 99.66 | 100.00 | GQ343019.1 |
| NMEGLINO_91 | 3 | 1346 | tet(O) | ARO:3000190 | tet(O) | 99.11 | 69.95 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NMEGLINO_91 | 1 | 1346 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.93 | 70.10 | M20925 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NMEGLINO_65 | 9899 | 10786 | cblA | CblA family class A beta-lactamase | BLASTX | 99.66 | 100.00 | WP_005827792.1 |
| NMEGLINO_91 | 3 | 1343 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | PARTIAL_CONTIG_ENDX | 100.00 | 69.95 | WP_044666383.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NMEGLINO_1 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_2 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_3 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_4 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_5 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_6 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_7 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_8 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_9 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_10 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_11 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_12 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_13 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_14 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_15 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_16 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_17 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_18 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_19 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_20 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_21 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_22 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_23 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_24 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_25 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_26 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_27 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_28 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_29 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_30 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_31 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_32 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_33 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_34 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_35 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_36 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_37 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_38 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_39 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_40 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_41 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_42 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_43 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_44 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_45 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_46 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_47 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_48 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_49 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_50 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_51 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_52 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_53 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_54 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_55 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_56 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_57 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_58 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_59 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_60 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_61 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_62 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_63 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_64 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_65 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_66 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_67 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_68 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_69 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_70 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_71 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_72 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_73 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_74 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_75 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_76 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_77 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_78 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_79 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_80 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_81 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_82 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_83 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_84 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_85 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_86 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_87 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_88 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_89 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_90 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_91 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_92 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_93 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_94 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_95 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_96 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_97 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_98 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_99 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_100 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_101 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_102 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_103 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_104 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_105 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_106 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_107 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_108 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_109 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_110 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_111 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_112 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_113 | 1.0 | 0.0 | 1.0 |
| NMEGLINO_114 | 0.0 | 1.0 | 0.0 |
| NMEGLINO_115 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NMEGLINO_47 | 19335 | 30000 | False | Unknown | VOG0982, |
Phigaro v2.4.0 (Database: Jan. 2024 release)