Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OKGBBFMB_4 | 223960 | 224754 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 100.00 | 100.00 | CP004067.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OKGBBFMB_4 | 223960 | 224754 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 100.00 | 100.00 | M26832 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OKGBBFMB_4 | 223960 | 224751 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | EXACTX | 100.00 | 100.00 | WP_001096887.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OKGBBFMB_1 | 0.0 | 1.0 | 0.0 |
| OKGBBFMB_2 | 0.0 | 1.0 | 0.0 |
| OKGBBFMB_3 | 0.0 | 1.0 | 0.0 |
| OKGBBFMB_4 | 0.0 | 1.0 | 0.0 |
| OKGBBFMB_5 | 0.0 | 1.0 | 0.0 |
| OKGBBFMB_6 | 0.0 | 1.0 | 0.0 |
| OKGBBFMB_7 | 1.0 | 0.0 | 1.0 |
| OKGBBFMB_8 | 0.0 | 1.0 | 0.0 |
| OKGBBFMB_9 | 0.0 | 1.0 | 0.0 |
| OKGBBFMB_10 | 1.0 | 0.0 | 1.0 |
| OKGBBFMB_11 | 0.0 | 1.0 | 0.0 |
| OKGBBFMB_12 | 0.0 | 1.0 | 0.0 |
| OKGBBFMB_13 | 1.0 | 0.0 | 1.0 |
| OKGBBFMB_14 | 1.0 | 0.0 | 1.0 |
| OKGBBFMB_15 | 0.0 | 1.0 | 0.0 |
| OKGBBFMB_16 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OKGBBFMB_1 | 483731 | 506030 | False | Siphoviridae | VOG2788, |
| OKGBBFMB_2 | 243276 | 250569 | False | Myoviridae | VOG5300, |
| OKGBBFMB_3 | 256887 | 269109 | False | Myoviridae | VOG9292, |
| OKGBBFMB_4 | 44062 | 47571 | False | Siphoviridae | VOG0025, |
| OKGBBFMB_5 | 18021 | 49885 | False | Siphoviridae | VOG6495, |
Phigaro v2.4.0 (Database: Jan. 2024 release)