Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PKMMGBHF_7 | 28278 | 27571 | WalR | 2.87e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| PKMMGBHF_3 | 96997 | 96800 | CspR | 2.54e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| PKMMGBHF_3 | 96997 | 96803 | CspA | 1.24e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PKMMGBHF_1 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_2 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_3 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_4 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_5 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_6 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_7 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_8 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_9 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_10 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_11 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_12 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_13 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_14 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_15 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_16 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_17 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_18 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_19 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_20 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_21 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_22 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_23 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_24 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_25 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_26 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_27 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_28 | 0.0 | 1.0 | 0.0 |
| PKMMGBHF_29 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_31 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_32 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_33 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_34 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_35 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_36 | 1.0 | 0.0 | 1.0 |
| PKMMGBHF_37 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)