GCA_015555785.1 - 16 region(s)

Identified secondary metabolite regions using strictness 'relaxed'

gnlProkkaJHGIFEFG_35 (original name was: gnl|Prokka|JHGIFEFG_35)

Region	Type	From	To	Most similar known cluster		Similarity
Region 35.1	cyclic-lactone-autoinducer	1	1,630

gnlProkkaJHGIFEFG_52 (original name was: gnl|Prokka|JHGIFEFG_52)

Region	Type	From	To	Most similar known cluster		Similarity
Region 52.1	cyclic-lactone-autoinducer	1	1,127

gnlProkkaJHGIFEFG_64 (original name was: gnl|Prokka|JHGIFEFG_64)

Region	Type	From	To	Most similar known cluster		Similarity
Region 64.1	ranthipeptide	54,675	76,523

gnlProkkaJHGIFEFG_70 (original name was: gnl|Prokka|JHGIFEFG_70)

Region	Type	From	To	Most similar known cluster		Similarity
Region 70.1	cyclic-lactone-autoinducer	54,808	75,374

gnlProkkaJHGIFEFG_81 (original name was: gnl|Prokka|JHGIFEFG_81)

Region	Type	From	To	Most similar known cluster		Similarity
Region 81.1	ranthipeptide,cyclic-lactone-autoinducer	1	28,466

gnlProkkaJHGIFEFG_84 (original name was: gnl|Prokka|JHGIFEFG_84)

Region	Type	From	To	Most similar known cluster		Similarity
Region 84.1	cyclic-lactone-autoinducer	1	10,400

gnlProkkaJHGIFEFG_95 (original name was: gnl|Prokka|JHGIFEFG_95)

Region	Type	From	To	Most similar known cluster		Similarity
Region 95.1	cyclic-lactone-autoinducer	1	13,827

gnlProkkaJHGIFEFG_100 (original name was: gnl|Prokka|JHGIFEFG_100)

Region	Type	From	To	Most similar known cluster		Similarity
Region 100.1	phosphonate	1	14,897	polysaccharide B	Saccharide	6%

gnlProkkaJHGIFEFG_102 (original name was: gnl|Prokka|JHGIFEFG_102)

Region	Type	From	To	Most similar known cluster		Similarity
Region 102.1	RRE-containing	137,309	157,560

gnlProkkaJHGIFEFG_111 (original name was: gnl|Prokka|JHGIFEFG_111)

Region	Type	From	To	Most similar known cluster		Similarity
Region 111.1	cyclic-lactone-autoinducer	1	10,213

gnlProkkaJHGIFEFG_112 (original name was: gnl|Prokka|JHGIFEFG_112)

Region	Type	From	To	Most similar known cluster		Similarity
Region 112.1	phosphonate	5,425	13,883

gnlProkkaJHGIFEFG_123 (original name was: gnl|Prokka|JHGIFEFG_123)

Region	Type	From	To	Most similar known cluster		Similarity
Region 123.1	ranthipeptide	1	6,914

gnlProkkaJHGIFEFG_126 (original name was: gnl|Prokka|JHGIFEFG_126)

Region	Type	From	To	Most similar known cluster		Similarity
Region 126.1	cyclic-lactone-autoinducer	1	6,417

gnlProkkaJHGIFEFG_127 (original name was: gnl|Prokka|JHGIFEFG_127)

Region	Type	From	To	Most similar known cluster		Similarity
Region 127.1	cyclic-lactone-autoinducer	1	6,148

gnlProkkaJHGIFEFG_141 (original name was: gnl|Prokka|JHGIFEFG_141)

Region	Type	From	To	Most similar known cluster		Similarity
Region 141.1	cyclic-lactone-autoinducer	1	4,141

gnlProkkaJHGIFEFG_145 (original name was: gnl|Prokka|JHGIFEFG_145)

Region	Type	From	To	Most similar known cluster		Similarity
Region 145.1	cyclic-lactone-autoinducer	1	3,647

Region	Type	From	To	Most similar known cluster	Similarity
Region 35.1	cyclic-lactone-autoinducer	1	1,630
Region 52.1	cyclic-lactone-autoinducer	1	1,127
Region 64.1	ranthipeptide	54,675	76,523
Region 70.1	cyclic-lactone-autoinducer	54,808	75,374
Region 81.1	ranthipeptide,cyclic-lactone-autoinducer	1	28,466
Region 84.1	cyclic-lactone-autoinducer	1	10,400
Region 95.1	cyclic-lactone-autoinducer	1	13,827
Region 100.1	phosphonate	1	14,897	polysaccharide B	Saccharide	6%
Region 102.1	RRE-containing	137,309	157,560
Region 111.1	cyclic-lactone-autoinducer	1	10,213
Region 112.1	phosphonate	5,425	13,883
Region 123.1	ranthipeptide	1	6,914
Region 126.1	cyclic-lactone-autoinducer	1	6,417
Region 127.1	cyclic-lactone-autoinducer	1	6,148
Region 141.1	cyclic-lactone-autoinducer	1	4,141
Region 145.1	cyclic-lactone-autoinducer	1	3,647

Compact view

gnlProkkaJHGIFEFG_35 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 1,630 nt. (total: 1,630 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

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core biosynthetic genes

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJHGIFEFG_52 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 1,127 nt. (total: 1,127 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJHGIFEFG_64 - Region 1 - ranthipeptide

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Location: 54,675 - 76,523 nt. (total: 21,849 nt) Show pHMM detection rules used

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJHGIFEFG_70 - Region 1 - cyclic-lactone-autoinducer

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Location: 54,808 - 75,374 nt. (total: 20,567 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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		NT	AA		NT	AA

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No matches found.

gnlProkkaJHGIFEFG_81 - Region 1 - cyclic-lactone-autoinducer,ranthipeptide

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Location: 1 - 28,466 nt. (total: 28,466 nt) Show pHMM detection rules used

Region on contig edge.

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))
cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJHGIFEFG_84 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 10,400 nt. (total: 10,400 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Gene details

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

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gnlProkkaJHGIFEFG_95 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 13,827 nt. (total: 13,827 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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gnlProkkaJHGIFEFG_100 - Region 1 - phosphonate

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Location: 1 - 14,897 nt. (total: 14,897 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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gnlProkkaJHGIFEFG_102 - Region 1 - RRE-containing

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Location: 137,309 - 157,560 nt. (total: 20,252 nt) Show pHMM detection rules used

RRE-containing: minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE])

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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		NT	AA		NT	AA

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gnlProkkaJHGIFEFG_111 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 10,213 nt. (total: 10,213 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Similar known gene clusters from MIBiG 3.1

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gnlProkkaJHGIFEFG_112 - Region 1 - phosphonate

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Location: 5,425 - 13,883 nt. (total: 8,459 nt) Show pHMM detection rules used

Region on contig edge.

phosphonate: (phosphonates and minimum(1, [2-Hacid_dh_C, Aldedh, Aminotran_1_2, Aminotran_5, AurF, CTP_transf_like, DUF4992, Fe-ADH, HMGL-like, Metallophos_2, NTP_transf_3, NTP_transf_5, PALP, PEP_mutase, TPP_enzyme_C, TPP_enzyme_N, phosphonates]) and not (phosphonatesHydrolase or phosphonatesMeIsocitrateLyase))

Legend:

core biosynthetic genes

additional biosynthetic genes

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regulatory genes

other genes

resistance

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No matches found.

gnlProkkaJHGIFEFG_123 - Region 1 - ranthipeptide

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Location: 1 - 6,914 nt. (total: 6,914 nt) Show pHMM detection rules used

Region on contig edge.

ranthipeptide: (TIGR03973 or SCIFF or (cds(PF04055 and (TIGR04085 or SPASM)) and minimum(1, [Bottromycin_Methyltransferase_RRE, Cyanobactin_D_RRE, Cytolysin_C_RRE, Goadsporin_CD_RRE, Heterocycloanthracin_C_RRE, Lanthipeptide_LanB_RRE, Lasso_Fused_RRE, Mycofactocin_RRE, NHLP_CD_RRE, Other_Sactipeptide_rSAM_RRE, Pantocin_Microcin_RRE, Plantazolicin_C_RRE, PlpY_RRE, PqqD_RRE, Proteusin_Epimerase_RRE, Proteusin_Methyltransferase_RRE, Quinohemoprotein_rSAM_RRE, Ranthipeptide_rSAM_RRE, Stand_Alone_Lasso_RRE, Streptide_RRE, Subtilosin_rSAM_RRE, Thiaglutamate_B_RRE, Thiaglutamate_G_RRE, Thiaglutamate_I_RRE, Thiopeptide_F_RRE, Thuricin_rSAM_RRE, Thurincin_rSAM_RRE, Trifolitoxin_RRE]) and not (TIGR01716 or subtilosin or TIGR02111 or TIGR03966 or TIGR04103 or (YcaO or TIGR03604))))

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJHGIFEFG_126 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 6,417 nt. (total: 6,417 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

No matches found.

gnlProkkaJHGIFEFG_127 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 6,148 nt. (total: 6,148 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

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No matches found.

gnlProkkaJHGIFEFG_141 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 4,141 nt. (total: 4,141 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

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gnlProkkaJHGIFEFG_145 - Region 1 - cyclic-lactone-autoinducer

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Location: 1 - 3,647 nt. (total: 3,647 nt) Show pHMM detection rules used

Region on contig edge.

cyclic-lactone-autoinducer: (TIGR04223 or AgrB)

Legend:

core biosynthetic genes

additional biosynthetic genes

transport-related genes

regulatory genes

other genes

resistance

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Identifier	Product	Length		Function	Sequence		NCBI Blast	Filter details
		NT	AA		NT	AA

Similar known gene clusters from MIBiG 3.1

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