Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HKFIIIAO_1 | 51939 | 52643 | WalR | 1.77e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HKFIIIAO_11 | 1 | 936 | rep28 | 936 / 936 | 100.00 | CP005948 |
| HKFIIIAO_6 | 21068 | 21696 | rep38 | 630 / 903 | 87.78 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HKFIIIAO_1 | 0.0 | 1.0 | 0.0 |
| HKFIIIAO_2 | 1.0 | 0.0 | 1.0 |
| HKFIIIAO_3 | 1.0 | 0.0 | 1.0 |
| HKFIIIAO_4 | 1.0 | 0.0 | 1.0 |
| HKFIIIAO_5 | 1.0 | 0.0 | 1.0 |
| HKFIIIAO_6 | 1.0 | 0.0 | 1.0 |
| HKFIIIAO_7 | 1.0 | 0.0 | 1.0 |
| HKFIIIAO_8 | 1.0 | 0.0 | 1.0 |
| HKFIIIAO_9 | 1.0 | 0.0 | 1.0 |
| HKFIIIAO_10 | 1.0 | 0.0 | 1.0 |
| HKFIIIAO_11 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HKFIIIAO_1 | 40353 | 51019 | False | Siphoviridae | VOG4632, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4568, VOG0204, VOG0198 |
| HKFIIIAO_1 | 559514 | 590441 | False | Siphoviridae | VOG0685, VOG0322, VOG0514, VOG8647, VOG0189, VOG6005, VOG1298, VOG0586, VOG0044, VOG3643, VOG4673, VOG5278, VOG5088, VOG4844, VOG4556, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888 |
| HKFIIIAO_1 | 1086864 | 1126000 | False | Siphoviridae | VOG1561, VOG4602, VOG6495, VOG2338, VOG4552, VOG6450, VOG0650, VOG0685, VOG0322, VOG0514, VOG8647, VOG0189, VOG4693, VOG0044, VOG0198, VOG10129, VOG4571, VOG5088, VOG4571, VOG4571, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957 |
| HKFIIIAO_1 | 1890680 | 1915011 | False | Siphoviridae | VOG9998, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841 |
| HKFIIIAO_1 | 2219294 | 2225095 | False | Siphoviridae | VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)