Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NJMKPHIL_125 | 112799 | 112996 | CspA | 1.63e-29 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| NJMKPHIL_125 | 112799 | 112993 | CspR | 2.96e-28 | cold shock protein | 84.61 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NJMKPHIL_1 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_2 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_3 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_7 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_15 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_21 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_24 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_30 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_34 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_35 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_37 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_41 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_42 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_43 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_46 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_48 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_49 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_52 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_53 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_55 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_56 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_60 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_71 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_82 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_83 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_94 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_105 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_116 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_118 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_119 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_120 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_121 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_122 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_123 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_124 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_125 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_126 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_127 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_128 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_129 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_130 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_131 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_132 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_133 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_134 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_135 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_136 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_137 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_138 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_139 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_140 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_141 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_142 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_143 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_144 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_145 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_146 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_147 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_148 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_149 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_150 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_151 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_152 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_153 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_154 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_155 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_156 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_157 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_158 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_159 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_160 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_161 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_162 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_163 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_164 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_165 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_167 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_168 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_169 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_170 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_171 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_172 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_173 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_174 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_175 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_176 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_177 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_178 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_179 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_180 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_181 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_182 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_183 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_185 | 0.0 | 1.0 | 0.0 |
| NJMKPHIL_186 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_187 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_189 | 1.0 | 0.0 | 1.0 |
| NJMKPHIL_190 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NJMKPHIL_34 | 3487 | 37112 | False | Siphoviridae | VOG4552, VOG2228, VOG1309, VOG0186, VOG0226, VOG0189, VOG10393, VOG1302, VOG0638, VOG8685, VOG0198, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG9471, VOG6163, VOG0801, VOG3462, VOG10972, VOG9997, VOG4856, VOG9880, VOG1637 |
| NJMKPHIL_83 | 64219 | 81910 | False | Myoviridae | VOG10457, VOG8295, VOG0025, VOG6085, VOG0226, VOG0205, VOG0384, VOG0382, VOG0083 |
Phigaro v2.4.0 (Database: Jan. 2024 release)