Probiotic potential risk score


ARGs VFs PGs PPRS
0011.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
MENLGNME_4860755881CspA8.65e-29cold shock protein83.0898.48CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
MENLGNME_100.01.00.0
MENLGNME_110.01.00.0
MENLGNME_120.01.00.0
MENLGNME_130.01.00.0
MENLGNME_140.01.00.0
MENLGNME_150.01.00.0
MENLGNME_160.01.00.0
MENLGNME_170.01.00.0
MENLGNME_180.01.00.0
MENLGNME_190.01.00.0
MENLGNME_200.01.00.0
MENLGNME_210.01.00.0
MENLGNME_220.01.00.0
MENLGNME_231.00.01.0
MENLGNME_240.01.00.0
MENLGNME_250.01.00.0
MENLGNME_261.00.01.0
MENLGNME_270.01.00.0
MENLGNME_280.01.00.0
MENLGNME_290.01.00.0
MENLGNME_300.01.00.0
MENLGNME_310.01.00.0
MENLGNME_320.01.00.0
MENLGNME_330.01.00.0
MENLGNME_340.01.00.0
MENLGNME_350.01.00.0
MENLGNME_360.01.00.0
MENLGNME_370.01.00.0
MENLGNME_380.01.00.0
MENLGNME_390.01.00.0
MENLGNME_401.00.01.0
MENLGNME_410.01.00.0
MENLGNME_420.01.00.0
MENLGNME_430.01.00.0
MENLGNME_440.01.00.0
MENLGNME_450.01.00.0
MENLGNME_460.01.00.0
MENLGNME_470.01.00.0
MENLGNME_480.01.00.0
MENLGNME_490.01.00.0
MENLGNME_500.01.00.0
MENLGNME_510.01.00.0
MENLGNME_520.01.00.0
MENLGNME_530.01.00.0
MENLGNME_540.01.00.0
MENLGNME_550.01.00.0
MENLGNME_560.01.00.0
MENLGNME_570.01.00.0
MENLGNME_581.00.01.0
MENLGNME_590.01.00.0
MENLGNME_600.01.00.0
MENLGNME_610.01.00.0
MENLGNME_620.01.00.0
MENLGNME_630.01.00.0
MENLGNME_640.01.00.0
MENLGNME_651.00.01.0
MENLGNME_660.01.00.0
MENLGNME_671.00.01.0
MENLGNME_680.01.00.0
MENLGNME_690.01.00.0
MENLGNME_700.01.00.0
MENLGNME_710.01.00.0
MENLGNME_721.00.01.0
MENLGNME_730.01.00.0
MENLGNME_741.00.01.0
MENLGNME_750.01.00.0
MENLGNME_761.00.01.0
MENLGNME_770.01.00.0
MENLGNME_780.01.00.0
MENLGNME_791.00.01.0
MENLGNME_810.01.00.0
MENLGNME_820.01.00.0
MENLGNME_830.01.00.0
MENLGNME_840.01.00.0
MENLGNME_860.01.00.0
MENLGNME_870.01.00.0
MENLGNME_890.01.00.0
MENLGNME_901.00.01.0
MENLGNME_910.01.00.0
MENLGNME_920.01.00.0
MENLGNME_931.00.01.0
MENLGNME_941.00.01.0
MENLGNME_951.00.01.0
MENLGNME_970.01.00.0
MENLGNME_1080.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
MENLGNME_205289563647FalseSiphoviridaeVOG4999, VOG4632, VOG10652, VOG8353, VOG10618, VOG0650, VOG5532, VOG9667, VOG0275, VOG7188
MENLGNME_33879613171TrueSiphoviridaeVOG0221, VOG0221, VOG9409, VOG0641, VOG4589, VOG0204
MENLGNME_751089736891TrueSiphoviridaeVOG10043, VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG4581, VOG4571, VOG4544, VOG10054, VOG3287, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9409, VOG0221, VOG0221
MENLGNME_861738526610FalseMyoviridae / SiphoviridaeVOG0221, VOG0774, VOG4821, VOG5944, VOG0862, VOG9667, VOG7581, VOG4552, VOG0979, VOG6450, VOG5420, VOG0283, VOG0514
MENLGNME_863331559458FalseSiphoviridaeVOG8453, VOG0866, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG4545, VOG0801, VOG3462, VOG3463, VOG5070, VOG8438

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements